Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2863 ATGAAGAGTGAAGATCAAAATCATGAATGCAGACAGTGTGTGAAGAGCTTCTCATCTGAAAAGGCTCTGCATGGCCATATGAGGCTTCATTCAGACAGGCCATGGAGAGGAATGCAACCTCCAACTCCCGCCCCCGTCGACTCCTTCCCGCCATTACCGTGCTGGATCAAAACCGCCAAGCGAGGCCGGACGAGCACAATCAGTACCAGTGCGTCAAGCTCCGCCTCCTCGGCTACTTCGAGTGTTGATCCTGAATTAGCAGTCAATGATACACTAGTGCAGCCTCACTTCAAAACTAAAAAGATAAAAAAGGATAATTTGAATAATCAAGCTCAACTGACAAATGTGAATTGTCCCAATAAGTTATACAGATGCAACAGTTGTGACAAAGAATTCACATCTCATCAAGCATTGGGAGGGCACAAATCCGGCCACAACAAAACGACGACGGTTTCGGGTTTGACCGAGCGGCAGCCAAGTCAAAAGAGAAAGGTTTTGGATATTGATCTGAATGAGCTGCCTCCCATGGACGAAGAAGAAGAAGCTATTCGTTTCAATTAG 561 46.35 MKSEDQNHECRQCVKSFSSEKALHGHMRLHSDRPWRGMQPPTPAPVDSFPPLPCWIKTAKRGRTSTISTSASSSASSATSSVDPELAVNDTLVQPHFKTKKIKKDNLNNQAQLTNVNCPNKLYRCNSCDKEFTSHQALGGHKSGHNKTTTVSGLTERQPSQKRKVLDIDLNELPPMDEEEEAIRFN 186
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39829230 39829790 + Sed0007909.1 Sed08g2863 724639

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2863 186 MobiDBLite consensus disorder prediction 137 159 - -
Sed08g2863 186 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
Sed08g2863 186 SMART c2h2final6 123 145 IPR013087 -
Sed08g2863 186 SMART c2h2final6 8 30 IPR013087 -
Sed08g2863 186 MobiDBLite consensus disorder prediction 21 51 - -
Sed08g2863 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 123 150 IPR013087 -
Sed08g2863 186 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 7 181 - -
Sed08g2863 186 MobiDBLite consensus disorder prediction 137 161 - -
Sed08g2863 186 Pfam C2H2-type zinc finger 8 32 IPR013087 -
Sed08g2863 186 Pfam C2H2-type zinc finger 123 146 IPR013087 -
Sed08g2863 186 SUPERFAMILY beta-beta-alpha zinc fingers 8 145 IPR036236 -
Sed08g2863 186 ProSitePatterns Zinc finger C2H2 type domain signature. 10 30 IPR013087 -
Sed08g2863 186 Gene3D Classic Zinc Finger 1 39 - -
Sed08g2863 186 Gene3D Classic Zinc Finger 96 181 - -
Sed08g2863 186 ProSiteProfiles Zinc finger C2H2 type domain profile. 8 35 IPR013087 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2863 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3794 Sed-Chr4:46485285 Sed08g2863 Sed-Chr8:39829230 3.50E-07 dispersed
Sed08g2862 Sed-Chr8:39824816 Sed08g2863 Sed-Chr8:39829230 2.90E-69 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g284 . . Bda06g00439 . Bpe07g00672 . . Bma12g00878 Cmo19g00814 . . . . Car20g00616 Sed08g2863 . Cpe15g00638 Bhi05g01589 Tan02g0583 Cmetu11g2392 . Hepe02g0374 . . Cla02g00353 Cam02g0362 Cec02g0363 Cco02g0370 Clacu02g0353 Cmu02g0350 Cre02g0682 Cone12ag1272 Cone8ag1326 Cone3ag1243 . Lsi10g00828 Csa07g00181 . Cme01g01152 . . . . . . . . . . Cmo20g00713 . Cma19g00793 . Car19g00610 Cpe16g00350 . . . . . . . . . . . . . . . Lsi11g01280 . Chy01g00600 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005208 1 0 1 1 1 2 0 2 2 2 2 2 0 2 2 0 2 1 0 1 3 0 2 0 0 1 0 2 2 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39479 PF13912 zf-C2H2_6 1.20E-07 CL0361 Sed TF