Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2869 ATGGCGGAAGCGGAATTTTCCGATCAGAATCGCCTTCTTAGATCCATGGAGGATCCCAATCAGGAAGATCATCACGATTTAGAATTGCAAGTTGGAAACGGAGTTCATCCGTTGAGAATCAACAGTGGAAAACGAGGCGGGTTCCTGGATCTGTTTCATAGAAGCTTCTCTGGTCGTCGTCTCGGTCATCGGCGTATTGATTTGGACAATCATGGCGTTAATTTCAGCCCTTCTTCTGTTAATATCGTTGGAAGAACTCGTATGGCTTCTTCTTCTTTTGATCGTCACAACAATTTCAATTCACATGCCCAAGCTGCAATCGATGACGAAGTTGACGACAATGGTGATGATACTGCCGCTCCTGAATGGGCTCTGCTCCTTATTGCTTGTCTCCTTGGCCTCGCTACCGGTCTTTGTGTTGCAGCTTTTAACATTGGGGTACATGTAATTCATGAGTGGGCGTGGGCTGGCACTCCAAATGAGGGTGCTGCTTGGCTTCGCTTACAGAGAATGGCTGATACTTGGCATCGTATTCTCTTGATACCGGTAGCGGGTGGTGTTATAGTGGGTATGATGCATGGGTTGCTTGAGATACTGAGCCAAATAAAACAGACAACTAGTTCCCAGAGCCAAGGATTTGATCTACTTTCCGGAGTCTTTCCTACAGTTAAAGCCATTCAGGCTGCCATCACTTTAGGTACTGGCTGTTCATTGGGTCCCGAAGGACCTAGTGTAGATATTGGAAAATCATGTGCCAACGGGTTCTATCTTGTGATGGAAAACAACAGTGAAAAGATAAAAATAGCATTTGTTGCAGCAGGTGCAGCAGCTGGAATTGCTTCAGGCTTTAATGCAGCTGTTGCGGGTAGTTTCTTTGCAATAGAAACTGTATTAAGGCCTCTGCGTGCAGAAAATTCACCTCCATTTACAACTGCAATGATCATATTGGCTTCGGTCATTTCTTCGACGGTCTCAACTGTTTTACTCGGGACACAGTCTGCTTTCACAGTACCTACTTATGATTTAAAATCTGCTGCTGAACTTCCGTTGTACTTGATATTGGGAATGTTATGTGGTGTTGTCAGTGAAGCCGTGACACGTTTAGTTGCTTGGTTCAGTAAATTATTTGAGTACATCAAGGAACGATTTGGCCTACCTCCTGTCGTCTGTCCTGCTTTAGGCGGTTTGGGAGCTGGAATAATAGCTCTTAAGTACCCTGGAGTCCTTTATTGGGGTTTCACAAACGTTGAAGAAATCCTTCATACTGGGAACCGTCCTTCAGCTCCTGGGATTTGGTTATTAACTCAAATAGCAGCTGCAAAAGTTGTGGCTACTGCTCTGTGCAAGGGTTCTGGCCTCGTAGGCGGCCTTTATGCACCCAGTCTAATGATTGGCGCTGCTGTTGGTGCCGTCTTTGGGGGTTCAGCTGTTGAACTTATTAATATTGCAATTCCTGGAAATGCAGCTGTCGCACAGCCACAGGCATATGCACTGGTTGGAATGGCTGCTACGTTGGCCTCAGTCTGTTCAGTGCCTTTGACATCCGTTCTACTTCTGTTTGAGCTGACTAAGGATTATAGGATACTCCTTCCTCTCATGGGAGCTGTTGGCTTGGCCATATGGGTTCCTTCAGTTACAAAACAGGCCAAAGAAACCGAATCATCTGATAAGCGGGGTTCTCGAGGTTATAGTCCTCTTTCCCCTTCTGAACTCAAGGATGGGGCATCTTGGAGGTATGATAATGGTGATAATGACATGGAGCTCTCAGAGGTAGTAAATCCATCTGACCGTGATTCTAATTATGATGATAATCTTCTTGAAAACCTAAAGGTTTCTCAAGCGATGTCAAAGAACTATTTGAAGGTTTCATTGTCTTTGTACTTGAGAGATGCACTAAAATATATGAAAGATAACCATCAGAACTGTGCATTGGTAGCTGATGATGATGATTTACTTGAGGGAATACTGACACATGGTGACATTAAAAGATATTTCTTCAAGATGTATGGTGATGCTCCGAAGGGGGATTCACTTGGTGTATGTATTGATAGCCTGCGATTTTTCGTTCCATGCTTTATTTTTCTCTTTTCTGTTCTATGTTTAGGTCCAGTTGTGTTCATGATCTTGTTGCATCTTAGAAAACTAGGCGCTTGA 2154 44.15 MAEAEFSDQNRLLRSMEDPNQEDHHDLELQVGNGVHPLRINSGKRGGFLDLFHRSFSGRRLGHRRIDLDNHGVNFSPSSVNIVGRTRMASSSFDRHNNFNSHAQAAIDDEVDDNGDDTAAPEWALLLIACLLGLATGLCVAAFNIGVHVIHEWAWAGTPNEGAAWLRLQRMADTWHRILLIPVAGGVIVGMMHGLLEILSQIKQTTSSQSQGFDLLSGVFPTVKAIQAAITLGTGCSLGPEGPSVDIGKSCANGFYLVMENNSEKIKIAFVAAGAAAGIASGFNAAVAGSFFAIETVLRPLRAENSPPFTTAMIILASVISSTVSTVLLGTQSAFTVPTYDLKSAAELPLYLILGMLCGVVSEAVTRLVAWFSKLFEYIKERFGLPPVVCPALGGLGAGIIALKYPGVLYWGFTNVEEILHTGNRPSAPGIWLLTQIAAAKVVATALCKGSGLVGGLYAPSLMIGAAVGAVFGGSAVELINIAIPGNAAVAQPQAYALVGMAATLASVCSVPLTSVLLLFELTKDYRILLPLMGAVGLAIWVPSVTKQAKETESSDKRGSRGYSPLSPSELKDGASWRYDNGDNDMELSEVVNPSDRDSNYDDNLLENLKVSQAMSKNYLKVSLSLYLRDALKYMKDNHQNCALVADDDDLLEGILTHGDIKRYFFKMYGDAPKGDSLGVCIDSLRFFVPCFIFLFSVLCLGPVVFMILLHLRKLGA 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39867720 39875163 + Sed0027047.3 Sed08g2869 724645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2869 717 ProSiteProfiles CBS domain profile. 615 674 IPR000644 -
Sed08g2869 717 PANTHER CHLORIDE CHANNEL PROTEIN CLC-E 94 670 IPR050368 GO:0005794(PANTHER)|GO:0009507(PANTHER)
Sed08g2869 717 Gene3D - 591 677 IPR046342 -
Sed08g2869 717 Pfam CBS domain 611 665 IPR000644 -
Sed08g2869 717 CDD Voltage_gated_ClC 136 539 - -
Sed08g2869 717 Gene3D Clc chloride channel 113 558 - -
Sed08g2869 717 SUPERFAMILY CBS-domain pair 607 667 IPR046342 -
Sed08g2869 717 MobiDBLite consensus disorder prediction 551 576 - -
Sed08g2869 717 FunFam Chloride channel protein 113 558 - -
Sed08g2869 717 SUPERFAMILY Clc chloride channel 121 546 IPR014743 -
Sed08g2869 717 Pfam Voltage gated chloride channel 201 542 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2869 717 PRINTS Chloride channel signature 276 295 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2869 717 PRINTS Chloride channel signature 224 243 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2869 717 PRINTS Chloride channel signature 494 510 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2869 717 PRINTS Chloride channel signature 512 531 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2869 717 PRINTS Chloride channel signature 453 473 IPR001807 GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2869 K03281 - - csv:101212254 1116.29
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2867 Sed-Chr8:39867720 Sed08g2869 Sed-Chr8:39867720 0.00E+00 dispersed
Sed08g2868 Sed-Chr8:39867720 Sed08g2869 Sed-Chr8:39867720 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g793 . . . . Bpe09g00096 . Bma10g00617 Bma13g01145 . . . . . . . . . . . . . . . . Cla10g00375 . . . . . . . . Cone14ag1276 Cone15ag1302 . . . . Blo07g00854 Blo10g00891 . Bda12g00991 . Bpe03g00734 . . Sed08g2869 . . . Cma16g00996 . Car16g00953 . . Bhi11g00403 Tan01g1903 Cmetu06g1959 . Hepe06g1241 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004422 1 1 2 4 2 1 2 1 1 1 3 1 2 1 1 2 1 2 2 1 1 0 1 1 2 1 0 3 1 1 43