Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2870 ATGGGGAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAATTCCCAGCCCAAGAACATTTTTCTCATCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGCCATGGATACTACTACCATCGGTGATAAAACTGAAGAGCTGTTTCTCATGCCTCGAGAACATACTTTATCGGAATACGGCATTGCAAGAGGTGGGAACCCGGGTATCAATTCTGGCGACCGGTCGATGGGTTTAGGTTCGTTCTCAGAGAAGAAGTTTCGTGGGGGTCTTGTGGAAAGGATTGCAGCCAGATCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATTAGATCCACAGATCATTCTTTGAATTCAGATGTCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCAACTACTTTGCTGGATTCTCCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCCATTTTTGCCAAATGTTAGTAACTGGAGCTCGATGATGACATTTGAGGCCAACAATAAAGGCAGCGACAATTCATTCAATGATAATAGTACATCATTTGCGTTCAGACCCGGTGTGGAATCAGGATCGTTCTTTTTTCATAGTGCAGCAAGCAAAACTGATTCTGCCACTATTCTTCCACAATCTCGTCCAAGAATTGAGGTTCCGGTTGTGCATTCAGAAAGTTCTTTTCAATCTCATCTTTTAGAACCATCTCTCGGAATCAGTCATCATCCTCAAGTGGGGCTCTCTACATCATGCGCAGAGAGGGAAGATGGGGGTAAGACAGTGTCAGACGATCAAAGAACCTTTGATTCTATGTGTGGTGGCGGCGAACATTCTTCACCACTCGACGAGCAACCAGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTTGTGGCGCTCCCTCGGAGGATGGATATAACTGGAGAAAATACGGACAAAAGCAGGTTAAAGGAAGCGAATTCCCCCGGAGTTATTACAAATGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTTGAGCGATCTCATGAGGGCCATATAACAGAGATTATCTACAAAGGAGCACATAACCACTCAAAGCCCTCGCCGAATCGACGAGCAGTAATCGGACCTTCTGATTTGCATATGAATACGCAACCAGACCTCCCTGCACAAGCAGGACAGCAGTGTGCTGAAGTACCCTTATGGGAAGATTCACCAAAAGGGGTGCCAACTGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCTTCCTTAGGCCCTGAATTTGGCAATCAGCCTAACCCTTTACAGGCTCAGAATGGCAGTCGTAATGAAACAGTTGAAGCCGTTGATGCGTCATACACGCTCTCTAATGATGAAGATGAAGATGACAGGGGAACACATGGCAGTATAACATTGGGCTATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCGTATGTAACAGAAATCAGCGGGGCCACTAGAGCTATACGTGAGCCTAGAGTTGTCGTCCAGACTACCAGTGAAGTGGATATTCTGGACGATGGCTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGTACTAATCCTGGCTGCACTGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAGTCAGTGATCACGACATATGAAGGAAAGCACAATCACGATGTTCCTGCTGCTCGTAACAGCAGCCACGTCAGTTCTGGTACATCCAGTTCAGTAACCGCTCAGAACCCGACTGCAGCAATTCAAACTCATGTTCACAGGCCAGGGCCGCCCCAGCCTCAAAGCACCATTCCAAGATTCGATAGGGCAGCCTTTGTGTTTGCTGGAAGACAGCAGATGGGCAATGGGCATGGCTTTTCTTTTGGAATGAACCATCCTGGGCTGGGAAATATGACAATGGCTGCAGTTGGCCAAGCCAAGGTTCCTGTTATGCCAATGCATCCATACATGGCACAAGCACACCGTGTTAATGAAATGGGTTACTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTTTATCAACAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA 2211 46.68 MGRTDDNVAIIGDWVPPIPSPRTFFSSMLGEDVGSRPAMDTTTIGDKTEELFLMPREHTLSEYGIARGGNPGINSGDRSMGLGSFSEKKFRGGLVERIAARSGFNAPRLNTESIRSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNWSSMMTFEANNKGSDNSFNDNSTSFAFRPGVESGSFFFHSAASKTDSATILPQSRPRIEVPVVHSESSFQSHLLEPSLGISHHPQVGLSTSCAEREDGGKTVSDDQRTFDSMCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGCGAPSEDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHSKPSPNRRAVIGPSDLHMNTQPDLPAQAGQQCAEVPLWEDSPKGVPTGAPDWMHENLEVTSSASLGPEFGNQPNPLQAQNGSRNETVEAVDASYTLSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEISGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVSSGTSSSVTAQNPTAAIQTHVHRPGPPQPQSTIPRFDRAAFVFAGRQQMGNGHGFSFGMNHPGLGNMTMAAVGQAKVPVMPMHPYMAQAHRVNEMGYLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39875708 39880579 - Sed0018136.1 Sed08g2870 724646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2870 736 SMART WRKY_cls 532 591 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 SMART WRKY_cls 317 375 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 MobiDBLite consensus disorder prediction 594 610 - -
Sed08g2870 736 Pfam WRKY DNA -binding domain 533 590 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 Pfam WRKY DNA -binding domain 318 373 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 MobiDBLite consensus disorder prediction 254 321 - -
Sed08g2870 736 FunFam WRKY transcription factor 308 377 - -
Sed08g2870 736 MobiDBLite consensus disorder prediction 436 499 - -
Sed08g2870 736 FunFam WRKY transcription factor 33 519 585 - -
Sed08g2870 736 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 186 611 IPR044810 GO:0003700(InterPro)
Sed08g2870 736 MobiDBLite consensus disorder prediction 585 610 - -
Sed08g2870 736 SUPERFAMILY WRKY DNA-binding domain 524 592 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 Gene3D WRKY domain 519 585 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 ProSiteProfiles WRKY domain profile. 318 376 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 SUPERFAMILY WRKY DNA-binding domain 316 376 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 ProSiteProfiles WRKY domain profile. 527 592 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 Gene3D WRKY domain 313 377 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2870 736 MobiDBLite consensus disorder prediction 436 466 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1327 Sed-Chr3:8471473 Sed08g2870 Sed-Chr8:39875708 2.50E-262 dispersed
Sed03g1367 Sed-Chr3:8701543 Sed08g2870 Sed-Chr8:39875708 4.00E-82 dispersed
Sed03g1368 Sed-Chr3:8701543 Sed08g2870 Sed-Chr8:39875708 1.00E-73 dispersed
Sed08g1210 Sed-Chr8:24995717 Sed08g2870 Sed-Chr8:39875708 2.30E-61 dispersed
Sed08g2870 Sed-Chr8:39875708 Sed11g2032 Sed-Chr11:34377014 1.80E-66 dispersed
Sed06g0971 Sed-Chr6:13206509 Sed08g2870 Sed-Chr8:39875708 1.00E-78 transposed
Sed03g1326 Sed-Chr3:8471473 Sed08g2870 Sed-Chr8:39875708 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39480 PF03106 WRKY 3.00E-24 CL0274 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2870 K18835 - csv:101207853 1189.87