Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2870 | ATGGGGAGGACTGATGATAATGTTGCTATAATTGGGGATTGGGTGCCTCCAATTCCCAGCCCAAGAACATTTTTCTCATCAATGCTAGGGGAGGATGTTGGTTCTAGACCTGCCATGGATACTACTACCATCGGTGATAAAACTGAAGAGCTGTTTCTCATGCCTCGAGAACATACTTTATCGGAATACGGCATTGCAAGAGGTGGGAACCCGGGTATCAATTCTGGCGACCGGTCGATGGGTTTAGGTTCGTTCTCAGAGAAGAAGTTTCGTGGGGGTCTTGTGGAAAGGATTGCAGCCAGATCTGGATTTAATGCTCCAAGATTGAATACAGAGAGCATTAGATCCACAGATCATTCTTTGAATTCAGATGTCAAGTCTCCTTACTTGACAATACCGCCTGGTCTCAGTCCAACTACTTTGCTGGATTCTCCAGTTTTTCTTTCAAATTCACTGGCTCAACAATCTCCCACAACTGGAAAGTTCCCATTTTTGCCAAATGTTAGTAACTGGAGCTCGATGATGACATTTGAGGCCAACAATAAAGGCAGCGACAATTCATTCAATGATAATAGTACATCATTTGCGTTCAGACCCGGTGTGGAATCAGGATCGTTCTTTTTTCATAGTGCAGCAAGCAAAACTGATTCTGCCACTATTCTTCCACAATCTCGTCCAAGAATTGAGGTTCCGGTTGTGCATTCAGAAAGTTCTTTTCAATCTCATCTTTTAGAACCATCTCTCGGAATCAGTCATCATCCTCAAGTGGGGCTCTCTACATCATGCGCAGAGAGGGAAGATGGGGGTAAGACAGTGTCAGACGATCAAAGAACCTTTGATTCTATGTGTGGTGGCGGCGAACATTCTTCACCACTCGACGAGCAACCAGATGAAGGGGAGCAAAGAGGCAGTGGGGATTCTATGGCTGGTGGTGGTTGTGGCGCTCCCTCGGAGGATGGATATAACTGGAGAAAATACGGACAAAAGCAGGTTAAAGGAAGCGAATTCCCCCGGAGTTATTACAAATGCACACATCCAAACTGTCAGGTCAAGAAGAAAGTTGAGCGATCTCATGAGGGCCATATAACAGAGATTATCTACAAAGGAGCACATAACCACTCAAAGCCCTCGCCGAATCGACGAGCAGTAATCGGACCTTCTGATTTGCATATGAATACGCAACCAGACCTCCCTGCACAAGCAGGACAGCAGTGTGCTGAAGTACCCTTATGGGAAGATTCACCAAAAGGGGTGCCAACTGGAGCTCCTGATTGGATGCATGAGAACCTTGAGGTGACTTCTTCAGCTTCCTTAGGCCCTGAATTTGGCAATCAGCCTAACCCTTTACAGGCTCAGAATGGCAGTCGTAATGAAACAGTTGAAGCCGTTGATGCGTCATACACGCTCTCTAATGATGAAGATGAAGATGACAGGGGAACACATGGCAGTATAACATTGGGCTATGAGGGGGAAGGAGATGAATCTGAGTCTAAGAAAAGGAAACTCGACGCGTATGTAACAGAAATCAGCGGGGCCACTAGAGCTATACGTGAGCCTAGAGTTGTCGTCCAGACTACCAGTGAAGTGGATATTCTGGACGATGGCTATCGTTGGCGCAAATACGGACAGAAGGTTGTGAAAGGAAATCCAAATCCTAGGAGTTACTACAAGTGTACTAATCCTGGCTGCACTGTGAGGAAGCATGTCGAGCGGGCATCACATGACCTGAAGTCAGTGATCACGACATATGAAGGAAAGCACAATCACGATGTTCCTGCTGCTCGTAACAGCAGCCACGTCAGTTCTGGTACATCCAGTTCAGTAACCGCTCAGAACCCGACTGCAGCAATTCAAACTCATGTTCACAGGCCAGGGCCGCCCCAGCCTCAAAGCACCATTCCAAGATTCGATAGGGCAGCCTTTGTGTTTGCTGGAAGACAGCAGATGGGCAATGGGCATGGCTTTTCTTTTGGAATGAACCATCCTGGGCTGGGAAATATGACAATGGCTGCAGTTGGCCAAGCCAAGGTTCCTGTTATGCCAATGCATCCATACATGGCACAAGCACACCGTGTTAATGAAATGGGTTACTTGTTGCCTAAAGGAGAGCCCAATGTAGAACCTACATCTGATCTTGGCTTGAACTTTTCCAATGGTTCAACCGTTTATCAACAAATTATGAGTAGGCTTCCACTTGGACCTGAGATGTGA | 2211 | 46.68 | MGRTDDNVAIIGDWVPPIPSPRTFFSSMLGEDVGSRPAMDTTTIGDKTEELFLMPREHTLSEYGIARGGNPGINSGDRSMGLGSFSEKKFRGGLVERIAARSGFNAPRLNTESIRSTDHSLNSDVKSPYLTIPPGLSPTTLLDSPVFLSNSLAQQSPTTGKFPFLPNVSNWSSMMTFEANNKGSDNSFNDNSTSFAFRPGVESGSFFFHSAASKTDSATILPQSRPRIEVPVVHSESSFQSHLLEPSLGISHHPQVGLSTSCAEREDGGKTVSDDQRTFDSMCGGGEHSSPLDEQPDEGEQRGSGDSMAGGGCGAPSEDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCQVKKKVERSHEGHITEIIYKGAHNHSKPSPNRRAVIGPSDLHMNTQPDLPAQAGQQCAEVPLWEDSPKGVPTGAPDWMHENLEVTSSASLGPEFGNQPNPLQAQNGSRNETVEAVDASYTLSNDEDEDDRGTHGSITLGYEGEGDESESKKRKLDAYVTEISGATRAIREPRVVVQTTSEVDILDDGYRWRKYGQKVVKGNPNPRSYYKCTNPGCTVRKHVERASHDLKSVITTYEGKHNHDVPAARNSSHVSSGTSSSVTAQNPTAAIQTHVHRPGPPQPQSTIPRFDRAAFVFAGRQQMGNGHGFSFGMNHPGLGNMTMAAVGQAKVPVMPMHPYMAQAHRVNEMGYLLPKGEPNVEPTSDLGLNFSNGSTVYQQIMSRLPLGPEM | 736 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 39875708 | 39880579 | - | Sed0018136.1 | Sed08g2870 | 724646 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2870 | 736 | SMART | WRKY_cls | 532 | 591 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | SMART | WRKY_cls | 317 | 375 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | MobiDBLite | consensus disorder prediction | 594 | 610 | - | - | |
Sed08g2870 | 736 | Pfam | WRKY DNA -binding domain | 533 | 590 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | Pfam | WRKY DNA -binding domain | 318 | 373 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | MobiDBLite | consensus disorder prediction | 254 | 321 | - | - | |
Sed08g2870 | 736 | FunFam | WRKY transcription factor | 308 | 377 | - | - | |
Sed08g2870 | 736 | MobiDBLite | consensus disorder prediction | 436 | 499 | - | - | |
Sed08g2870 | 736 | FunFam | WRKY transcription factor 33 | 519 | 585 | - | - | |
Sed08g2870 | 736 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 186 | 611 | IPR044810 | GO:0003700(InterPro) | |
Sed08g2870 | 736 | MobiDBLite | consensus disorder prediction | 585 | 610 | - | - | |
Sed08g2870 | 736 | SUPERFAMILY | WRKY DNA-binding domain | 524 | 592 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | Gene3D | WRKY domain | 519 | 585 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | ProSiteProfiles | WRKY domain profile. | 318 | 376 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | SUPERFAMILY | WRKY DNA-binding domain | 316 | 376 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | ProSiteProfiles | WRKY domain profile. | 527 | 592 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | Gene3D | WRKY domain | 313 | 377 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2870 | 736 | MobiDBLite | consensus disorder prediction | 436 | 466 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1327 | Sed-Chr3:8471473 | Sed08g2870 | Sed-Chr8:39875708 | 2.50E-262 | dispersed | |
Sed03g1367 | Sed-Chr3:8701543 | Sed08g2870 | Sed-Chr8:39875708 | 4.00E-82 | dispersed | |
Sed03g1368 | Sed-Chr3:8701543 | Sed08g2870 | Sed-Chr8:39875708 | 1.00E-73 | dispersed | |
Sed08g1210 | Sed-Chr8:24995717 | Sed08g2870 | Sed-Chr8:39875708 | 2.30E-61 | dispersed | |
Sed08g2870 | Sed-Chr8:39875708 | Sed11g2032 | Sed-Chr11:34377014 | 1.80E-66 | dispersed | |
Sed06g0971 | Sed-Chr6:13206509 | Sed08g2870 | Sed-Chr8:39875708 | 1.00E-78 | transposed | |
Sed03g1326 | Sed-Chr3:8471473 | Sed08g2870 | Sed-Chr8:39875708 | 0.00E+00 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39480 | PF03106 | WRKY | 3.00E-24 | CL0274 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2870 | K18835 | - | csv:101207853 | 1189.87 |