Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2876 ATGCATTTCGAAATTTCGTACATTGTTTATTTGGGTGGTCAGAAGTTTGGAAAAAAATCGAGTATATTTGATGTCAAACTTGCAAAACAGTCTCAATTTGATATATTAGAATCAGTCTTGGAAAGCAAAGTGGCTGTCAAAGAGTCACTTATCTATTCGTATAGCAAATACATGAATGGATTTGCTGCCTTGCTTGACGAAAAGCAAGTAGTGGATCTTGAAAAGAATCCAAGCGTGGTATCGGTTTTTGAGAACACGATAAGACATTTGCACACAACGCGATCATGGCACTTTCTGGGAATGGAAAATGATGCCGGAATTCCTGCCAACTCCATTTGGAATGCTGCCAAGTTCGGCGAAGATGTCATTATCGGGAACCTCGACACCGGTGTTTGGCCAGAATCCAAGAGCTTCGACGATACAGGCTACGGCCCTGTCCCCAAAAGGTGGATGGGAGAATGTGATGGTGGCGCCAACTTTACTTGCAACAGGAAGTTGATTGGAGCAAGATATTTCTACCAAGGAATTGAAAGTACAAATGGTCCATTAAACATTAGCATGCACACTGCTCGTGACCATGAAGGCCATGGCTCACACACTTTGTCAACTGCGGGAGGTAACCTTGTCCCTGGAGCCAACGTCTTTGGCAGTGGCAACGGCACTGCAAAAGGAGGCTCCCCCAAGGCTCGTGTTGTTGCCTACAAGGTATGCTGGCCTGGTGGCTGCTCCGACGCAGATATCCTGGCTGGTTTCGAAGCTGCCATGGACGACGGTGTTGATGTTCTCTCTGTCTCTCTTGGTTCTAGAGCTACGCAGTTTGCTACCGACCCAGTTTCGGTAGCATCGTTCCATGCTGTTCAACAAGGAATCGTTGTGGTTTGCTCAGCTGGAAATAACGGCCCGGATCCTGCCACTGTAGCCAATATAGCTCCTTGGATGTTCACTGTTGCAGCTAGCACTATCGATCGAGAATTCGTCAGTTATGTGGGGCTCGGAAACAAGAAGCAAATCAAGGGTTCAAGTCTTTCATCTGAAGGATTGGCGGTTGGTAGTCTCCACCCTTTGATCAATGCTGTGGATGCAAAAGCTGCCAATGTCCCTGATAAACTTGCCCAACTTTGCGAGAAGGATTCTCTTGATCCCGCAAAGGCAAAAGGGAAGATTGTAGTTTGCCTCTGTGGAGACGATGAAAACGTGGATCAAGGTTTCGAGGTTCGTCGTGCCGGTGGTGTCGGTCTGATTTTAGTAAACGACGAGGAAGATGGAGCAGACACTATATCCGATCCGCATTTTCTTCCTGCTTCTCATGTTAGCCATGAAGATGGACTTTTGATTGCTCAATATATGAAATCGACCACAACACCGGAGGCTTCCATATCCGCTGTAAAGACTGAGATTGGAGTTAAACCTTCACCTGTCATGGCTGTATTCTCATCAAGAGGCCCTAATCCTATCGAAGAATCCATGATCAAGCCTGATATCACAGCACCGGGAGTGACTATAATCGCATCCATGCCTGAAGCAGTGGCAGCATCTAAATCGGCACTCGATACGCGCCGGGTGCCCTTTAACATTTTATCTGGCACTTCCATGGCCTGCCCGCATATCTCAGGTATTGCAGGGCTTCTCAGGGTCCTCAATCCCACTTGGAGTCCAGCAGCTATCAGATCTGCCATGATGACTACTGCCATAACAATTGACAACACCAATCATTCAATGCTTAACTCCAACAAAGCCGATGCAACCCCATTTGATTATGGGGCAGGCTATGTCCAACCCAACAATGCAATGGACCCCGGTCTCATTTACAACACAACCATCGAGGATTACTTGAACTTCTTATGCGCAAAGAAGTACACCGACGCTGAACTCAAGAAATTCTCTACCCAAGCATTCTTGTGCGAGGAATCGTTTGCAGTAACAGATCTTAACTACCCATCGATCTCAATCCCGAAGTTGGCTGCGGGTGCCCCAGTGACTATAAACAGAAGACTTCTGAACGTGGGAAGCCCGGGTACGTATGTTGCACAGGTGAAGGTGCCCGAGAGCGTTCAAGCTAAGGTCGAGCCGAGTTCGTTGCAGTTTAGCAAAGTGGATGAAGAGAAGTCTTTCAAGATTGTATTTCAACATGTAGGGGAGCGACGTGTAAGCTATGAGTTTGGAACATTGGAATGGTCAGATGGAAAGCATTTTGTTAGAAGTCCTTTAGCTTTCATGGGATGA 2223 46.96 MHFEISYIVYLGGQKFGKKSSIFDVKLAKQSQFDILESVLESKVAVKESLIYSYSKYMNGFAALLDEKQVVDLEKNPSVVSVFENTIRHLHTTRSWHFLGMENDAGIPANSIWNAAKFGEDVIIGNLDTGVWPESKSFDDTGYGPVPKRWMGECDGGANFTCNRKLIGARYFYQGIESTNGPLNISMHTARDHEGHGSHTLSTAGGNLVPGANVFGSGNGTAKGGSPKARVVAYKVCWPGGCSDADILAGFEAAMDDGVDVLSVSLGSRATQFATDPVSVASFHAVQQGIVVVCSAGNNGPDPATVANIAPWMFTVAASTIDREFVSYVGLGNKKQIKGSSLSSEGLAVGSLHPLINAVDAKAANVPDKLAQLCEKDSLDPAKAKGKIVVCLCGDDENVDQGFEVRRAGGVGLILVNDEEDGADTISDPHFLPASHVSHEDGLLIAQYMKSTTTPEASISAVKTEIGVKPSPVMAVFSSRGPNPIEESMIKPDITAPGVTIIASMPEAVAASKSALDTRRVPFNILSGTSMACPHISGIAGLLRVLNPTWSPAAIRSAMMTTAITIDNTNHSMLNSNKADATPFDYGAGYVQPNNAMDPGLIYNTTIEDYLNFLCAKKYTDAELKKFSTQAFLCEESFAVTDLNYPSISIPKLAAGAPVTINRRLLNVGSPGTYVAQVKVPESVQAKVEPSSLQFSKVDEEKSFKIVFQHVGERRVSYEFGTLEWSDGKHFVRSPLAFMG 740
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39910216 39915144 + Sed0024525.1 Sed08g2876 724652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2876 740 FunFam Subtilisin-like protease SBT5.3 2 91 - -
Sed08g2876 740 Gene3D Peptidase S8/S53 domain 121 610 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2876 740 Gene3D - 614 739 - -
Sed08g2876 740 ProSitePatterns Serine proteases, subtilase family, serine active site. 528 538 IPR023828 -
Sed08g2876 740 SUPERFAMILY Subtilisin-like 90 601 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2876 740 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 3 91 IPR037045 -
Sed08g2876 740 FunFam Subtilisin-like protease SBT1.5 121 333 - -
Sed08g2876 740 Gene3D - 322 466 - -
Sed08g2876 740 PRINTS Subtilisin serine protease family (S8) signature 119 138 IPR015500 -
Sed08g2876 740 PRINTS Subtilisin serine protease family (S8) signature 192 205 IPR015500 -
Sed08g2876 740 PRINTS Subtilisin serine protease family (S8) signature 527 543 IPR015500 -
Sed08g2876 740 SUPERFAMILY Protease propeptides/inhibitors 25 90 - -
Sed08g2876 740 Pfam PA domain 372 444 IPR003137 -
Sed08g2876 740 ProSiteProfiles Serine proteases, subtilase domain profile. 95 597 - -
Sed08g2876 740 CDD PA_subtilisin_like 328 459 - -
Sed08g2876 740 CDD Peptidases_S8_3 89 564 IPR034197 -
Sed08g2876 740 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 7 736 IPR045051 -
Sed08g2876 740 Pfam Subtilase family 119 589 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed08g2876 740 FunFam subtilisin-like protease SBT1.5 322 466 - -
Sed08g2876 740 Pfam Peptidase inhibitor I9 6 91 IPR010259 -
Sed08g2876 740 Pfam Fibronectin type-III domain 642 737 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2876 Sed-Chr8:39910216 Sed08g2878 Sed-Chr8:39924691 1.80E-252 dispersed
Sed08g2876 Sed-Chr8:39910216 Sed08g2877 Sed-Chr8:39916164 5.30E-244 tandem
Sed03g1334 Sed-Chr3:8497376 Sed08g2876 Sed-Chr8:39910216 3.00E-282 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2876 - - - 0.0