Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2877 ATGGAGGCTTCCAATATTTCTCCATTGCTTTTGTTGTTGCTATTGTTCTTCTCTTTATTGCAAACTTCCACTATTGCCATTAAAAAGTCTTACATTGTTGCTTTGGATCCTTCCTCTAATTTGTCAACTCACTTCCAACAAGTGACAGCGTTTCATTATGATTTGTTGGGCTCTTTGCTGGGAAGTAAAAAGATGGCCCAGGAAGCTATTTTCTACTCCTATACTAGAAGTTTCAATGGTTTTGCAGCCAAACTTGATGAGAAGGAAGCAGCAGATCTAGCAAGAAACCCTAATGTGATATCAGTGTTAGAAAACAAGGCAAGAAAATTGCACACAACAAGGTCATGGAATTTTCTTGGCTTGGAGAAGGAACAAGGAAATATTCCTTCAAACTCCCTTTGGAAGGCTGCAGAGTTTGGTCAAGATATGATTGTAGGCAACATCGATTCAGGTGTTTGGCCCGAGTCAAAGAGCTTTAGTGATGAAGGGTATGGAGCTGTGCCATCAAAGTGGCGAGGCATTTGTCAAACCGATTCCAATTTTTACTGCAACAAAAAGCTTATTGGGGGAAGATATTTCCACAAAGGATATGAAGCCGCCGGTGGCGTTCTCGATCCCAGTTTACTCACAGTTCGCGATCACGACGGCCATGGAACCCACACTCTCTCCACCGCCGCCGGAAACTTCGTCGCCGGAGCCAACGTTTTCGGCCATGGAAACGGCACGGCCAAAGGCGGTGCTCCAAAAGCCCGTGTCGTCGCCTACAAGGTCTGCTGGCCCCCATTCAATGGCGGAATGTGCTTTGACGCCGATATCATCGCCGCCTTCGAAGCTGCCATCGCCGACGGAGTCGATGTCATTTCCGGTTCCATCGGTGCCACCGCCGGTGAATTTTTCAACGATCCAATCGCCATGATCTCTTTCCATGCCGTTCAACAAGGCATCGACGTCGTCCTCTCCGGCGGAAACGAAGGTCCTCTTCCCGGGACCGTCAGTAATGTCGCGCCCTGGGTGACCACCGTTGCGGCGAGCACCATGGACAGAGATTTCGCCAGTTATGTCGTGCTTGGAAATAAGAAAATCCTAAAGGGCGTAAGCCTTTCGTCCGTTGCCCCATTGCCTGAGAAGTTCTATCCATTGATCACTGCCGTGGATGCAAAATTTAGCAATATCACCGATTTATCTGCGCAATCATGTGGCGCGGGGACGCTCGATCCTATCAAGGTGAAGGGGAAGATCTTGATTTGTGTTGCAGGGGGGCTTCAACCAGTAGAAAAGGGTTACCATGCTGCACAAGCAGGTGCTGTGGGAATGATTTTGGCTAACCTTAATGAAAAGGGGGATGAAATCTTTCCTCAGTTGCACTTCCTTCCAGCTTCAGATATTACCAGTGGCGATGCCGAATTGCTTAAACAATATCTCACTTCCACCAAGACACCAGAAGCTCATTTAAAGAACGTGAAGACTGAGCTAGGAGTAAAACCGGCTCCAGTCATGGCTAGCTTTTCATCCCGAGGCCCCAACTTAGTAGTGAGCAATATCCTCAAGCCTGACATAACAGCGCCTGGTGTGACCATACTGGCGTCTTACCCCACTGTAACACCCCCCTTTCCTTCCACCAACGACCATCGGCGGATCCCGTTTAATGCACTCTCTGGAACTTCCATGTCCTGCCCTCACATCTCCGGTATTGTGGCCCTTCTCAAGTTCATTCATCCCAAATGGAGCCCGTCTGCCATTAAATCCGCAATTATGACCACTGCCAAAACACTAGACAACAACTTGAAAACAATCCTCGATTGGACCAAACTCGAAGCCACCCCCTTCGCTTATGGTGGAGGACATGTTGATCCGAATGCTGCAATGGACCCTGGCCTTGTTTATGATGCTACATTCGAGGACTACTTAAACTTCTTGTGTGCTCGAGGCTACAATGCAATGGATATTAAGAAATTCTATGATAAGCCATTTACTTGTGACAAGTCATTCCATGTCCGAGATCTCAACTACCCATCGTTCTCCATTGGGGAAGCATTGAAAGTTGGTGCTTCAGTGACCATCAATAGGAGACTTAAGAATGTGGGAAGTCCAGGCACATATGTGGCACAAGTGAAGGTGTCCCCACAAGTTTCGGTTTCGGTCAAGCCGAGCATGTTGCAGTTTAGCCGTCTTGGGGAAGAGAAGGCCTTCAAGGTCGTGGTGCAAAACAAGGGGAAAGTGAAACATGAAGGCTATGTGTTTGGAACATTGGTCTGGTATGATGGTAAGCATTCTGTTAAAAGTCCTATTGCAATCAATTTGGGATAA 2307 47.64 MEASNISPLLLLLLLFFSLLQTSTIAIKKSYIVALDPSSNLSTHFQQVTAFHYDLLGSLLGSKKMAQEAIFYSYTRSFNGFAAKLDEKEAADLARNPNVISVLENKARKLHTTRSWNFLGLEKEQGNIPSNSLWKAAEFGQDMIVGNIDSGVWPESKSFSDEGYGAVPSKWRGICQTDSNFYCNKKLIGGRYFHKGYEAAGGVLDPSLLTVRDHDGHGTHTLSTAAGNFVAGANVFGHGNGTAKGGAPKARVVAYKVCWPPFNGGMCFDADIIAAFEAAIADGVDVISGSIGATAGEFFNDPIAMISFHAVQQGIDVVLSGGNEGPLPGTVSNVAPWVTTVAASTMDRDFASYVVLGNKKILKGVSLSSVAPLPEKFYPLITAVDAKFSNITDLSAQSCGAGTLDPIKVKGKILICVAGGLQPVEKGYHAAQAGAVGMILANLNEKGDEIFPQLHFLPASDITSGDAELLKQYLTSTKTPEAHLKNVKTELGVKPAPVMASFSSRGPNLVVSNILKPDITAPGVTILASYPTVTPPFPSTNDHRRIPFNALSGTSMSCPHISGIVALLKFIHPKWSPSAIKSAIMTTAKTLDNNLKTILDWTKLEATPFAYGGGHVDPNAAMDPGLVYDATFEDYLNFLCARGYNAMDIKKFYDKPFTCDKSFHVRDLNYPSFSIGEALKVGASVTINRRLKNVGSPGTYVAQVKVSPQVSVSVKPSMLQFSRLGEEKAFKVVVQNKGKVKHEGYVFGTLVWYDGKHSVKSPIAINLG 768
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39916164 39923049 + Sed0002069.1 Sed08g2877 724653
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2877 768 FunFam Subtilisin-like protease SBT1.5 639 768 - -
Sed08g2877 768 Pfam Peptidase inhibitor I9 30 111 IPR010259 -
Sed08g2877 768 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 31 763 IPR045051 -
Sed08g2877 768 Pfam PA domain 396 469 IPR003137 -
Sed08g2877 768 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Sed08g2877 768 PRINTS Subtilisin serine protease family (S8) signature 552 568 IPR015500 -
Sed08g2877 768 PRINTS Subtilisin serine protease family (S8) signature 140 159 IPR015500 -
Sed08g2877 768 Gene3D - 347 491 - -
Sed08g2877 768 CDD Peptidases_S8_3 109 588 IPR034197 -
Sed08g2877 768 Gene3D Peptidase S8/S53 domain 142 635 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2877 768 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 18 111 IPR037045 -
Sed08g2877 768 FunFam subtilisin-like protease SBT1.5 347 491 - -
Sed08g2877 768 SUPERFAMILY PA domain 402 488 IPR046450 -
Sed08g2877 768 Pfam Subtilase family 141 593 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed08g2877 768 ProSitePatterns Serine proteases, subtilase family, serine active site. 553 563 IPR023828 -
Sed08g2877 768 FunFam Subtilisin-like protease SBT5.3 20 111 - -
Sed08g2877 768 FunFam Subtilisin-like protease SBT1.5 142 359 - -
Sed08g2877 768 Pfam Fibronectin type-III domain 667 765 IPR041469 -
Sed08g2877 768 CDD PA_subtilisin_like 353 482 - -
Sed08g2877 768 SUPERFAMILY Protease propeptides/inhibitors 29 107 - -
Sed08g2877 768 ProSiteProfiles Serine proteases, subtilase domain profile. 115 622 - -
Sed08g2877 768 Gene3D - 639 767 - -
Sed08g2877 768 SUPERFAMILY Subtilisin-like 110 626 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2877 Sed-Chr8:39916164 Sed08g2884 Sed-Chr8:39952090 6.70E-258 dispersed
Sed08g2876 Sed-Chr8:39910216 Sed08g2877 Sed-Chr8:39916164 5.30E-244 tandem
Sed08g2877 Sed-Chr8:39916164 Sed08g2878 Sed-Chr8:39924691 6.90E-263 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2877 - - - 0.0