Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2878 ATGGAAGCTTTCACTTTCAATCCATTGCTTTTCTCATTCATTCTTTTTGCTTTGTTTCAAACACCCACCATTGCAGCCAAGGAGTCTTATATTGTTTACTTGGGATCACATTCACATGGTTTGAATCCTTCTGAAATTGATCTCCAAATTGCAACAGATTCTCACTATAATTTGCTTGGGTCCTTGTTGGGAAGTAATGAAGCAGCTAAGGAAGCAATTTTCTACTCATATAATAGAAATATCAATGGCTTTGCTGCTGTGCTTGATGAGGAAGTTGCAGAAGATCTAGCAAAACATCCGGACGTGGTATTGGTACACAAAAACAAGGCAAGAAAACTGCACACGACAAGTTCATGGAGGTTTCTTGGATTAGAGAATGGTGGTGGAATTATTCCTTCAAACTCTCTTTGGAATGCTGGGAGTTTTGGTGAATCTACAATCATTGCCACTCTTGACACAGGTGTTTGGCCGGAATCAAGGAGCTTCGATGATAAAGGATATGGACCTATCCCAACAAGGTGGAAGGGAAGTTGTGAAGGTGGCTCCAAATTTCATTGCAACAGGAAGCTGATAGGAGCAAGGTACTTCAACAAAGGTTATGCATCCATCGCAGGGCCTCTCCATCCAAGCTTTGAAACAGCAAGGGACCATGAAGGCCATGGAACACACACTTTATCCACGGCCGGAGGCAATTTTGTTGCAGGAGCAAGCGTTTTTGGCAATGGATATGGCACTGCAAAAGGCGGCTCTCCTAAAGCCCTCGTTGCTGCCTACAAAGTTTGTTGGCCTCCACTCCTCTTGTTTGGTGGATGCTTTGAGGCTGACATTCTGGCTGCCTTTGAAGCTGCCATTACAGATGGGGTTGATGTTTTGTCCGTTTCACTCGGCGGCGATCCCCAAGATTTTGCTGATGATGTGCTGGCCATAGCGAGCTTCCATGCAGTTCAGCACGGCATTATTGTCGTCTGCTCAGCTGGAAACTCAGGACCTACACCAGGCTCAGTGTCAAATGTGGCACCATGGATTATAACTGTGGGAGCTAGTACAATCGACAGACTCTTTACCAGTTATGTTGCCCTCGGAGACAAGAGGCATATCAAGGGTGCAAGTCTTTCTGATAAAATATTGCCAGCTCAAAAGTTCTATCCATTGATCAGCTCTATAGATGCGAAAGCCAACAATATTTCTGACAGCAAAGCCCAACTATGTGAAGAAGGGTCTCTTGATCCTGAAAAGGTAAAAGGGAAGATTGTAGTTTGCATTAGAGGGGACAATTCAAGAGTGGACAAAGGTTATGTGGCTGCTCAAGCAGGTGCTGTTGGGATGATTCTTGCTAATGACAAGCTCAATGGGGATGAACTTTTAGCTGATGCACACTTACTTCCTGCTTCCCATATACCCTATGTTGATGGTCAATTAGTCTACCAATACATCAACTCTACCAAAGTCCCAATGGCTTTTATGACTCACGTAAGGACAGAGTTGGGAGTCAAACCGGCTCCATTCATGGCTGCATTCTCATCAAGAGGTCCCAACACAGTTGAGGCTTCAATACTCAAGCCTGATATAACAGCACCAGGTGTCAATATAATAGCGGCTTTTTCGGAAGATTCATCGCCAACTGGTTCAGATTTAGATGAACGTCGAATTCCATTTAATGTAGAATCTGGGACTTCCATGTCATGCCCCCATGTTTCTGGTATTGTTGGCCTTCTCAAAACCCTTTATCCAAAATGGAGTCCTGCTGCTATCAGATCTGCAATCATGACCACAGCTAGAACAAAAGCCAACGACTTAAACCCAATTCCAAGCACAACCCAGATGAAAGCAAACCCATTTGCATATGGAGCAGGACATGTGAATCCAAACAGAGCGGCAAATCCGGGCCTAGTTTACGACCTGAGCACCAAAGACTACTTAAACTTCCTATGCGCTCGAGGCTACAACCACACGCAAATGAAGCAATTCTCCAACACAACATTTGTTTGTTCAAAGTCCTTCAAATTAACAGACCTGAACTACCCATCAATCTCCATCCCTGAGCTGAAATCAGAGGCAGTGAAGGTGAAGAGAAGAGTGACGAGCGTGGGAGGTCCCGGTACCTATGTCGCCAATGTCAAGGCGCCGCCTGGTGTTTCGGTTGCGGTCGAACCGAGTACGTTGAAGTTTACTGGATTTGAGGAAGAGAAGAGTTTCAGAGTCGTGTTGAAGAGGATACCAAATGATTATCATAGAGGGTATGTGTTTGGGAGGCTTGCTTGGTCGGATGGGAAGCATCGTGTGAGAAGTCCAATTGTGGTGAGGTTGGGATGA 2313 45.09 MEAFTFNPLLFSFILFALFQTPTIAAKESYIVYLGSHSHGLNPSEIDLQIATDSHYNLLGSLLGSNEAAKEAIFYSYNRNINGFAAVLDEEVAEDLAKHPDVVLVHKNKARKLHTTSSWRFLGLENGGGIIPSNSLWNAGSFGESTIIATLDTGVWPESRSFDDKGYGPIPTRWKGSCEGGSKFHCNRKLIGARYFNKGYASIAGPLHPSFETARDHEGHGTHTLSTAGGNFVAGASVFGNGYGTAKGGSPKALVAAYKVCWPPLLLFGGCFEADILAAFEAAITDGVDVLSVSLGGDPQDFADDVLAIASFHAVQHGIIVVCSAGNSGPTPGSVSNVAPWIITVGASTIDRLFTSYVALGDKRHIKGASLSDKILPAQKFYPLISSIDAKANNISDSKAQLCEEGSLDPEKVKGKIVVCIRGDNSRVDKGYVAAQAGAVGMILANDKLNGDELLADAHLLPASHIPYVDGQLVYQYINSTKVPMAFMTHVRTELGVKPAPFMAAFSSRGPNTVEASILKPDITAPGVNIIAAFSEDSSPTGSDLDERRIPFNVESGTSMSCPHVSGIVGLLKTLYPKWSPAAIRSAIMTTARTKANDLNPIPSTTQMKANPFAYGAGHVNPNRAANPGLVYDLSTKDYLNFLCARGYNHTQMKQFSNTTFVCSKSFKLTDLNYPSISIPELKSEAVKVKRRVTSVGGPGTYVANVKAPPGVSVAVEPSTLKFTGFEEEKSFRVVLKRIPNDYHRGYVFGRLAWSDGKHRVRSPIVVRLG 770
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39924691 39930295 + Sed0012718.1 Sed08g2878 724654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2878 770 Pfam Peptidase inhibitor I9 29 114 IPR010259 -
Sed08g2878 770 FunFam Subtilisin-like protease SBT5.3 19 114 - -
Sed08g2878 770 SUPERFAMILY Subtilisin-like 114 630 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2878 770 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 19 114 IPR037045 -
Sed08g2878 770 ProSitePatterns Serine proteases, subtilase family, serine active site. 557 567 IPR023828 -
Sed08g2878 770 SUPERFAMILY Protease propeptides/inhibitors 28 110 - -
Sed08g2878 770 Pfam Fibronectin type-III domain 671 767 IPR041469 -
Sed08g2878 770 FunFam Subtilisin-like protease SBT1.5 643 770 - -
Sed08g2878 770 Gene3D - 643 769 - -
Sed08g2878 770 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 766 IPR045051 -
Sed08g2878 770 SUPERFAMILY PA domain 410 482 IPR046450 -
Sed08g2878 770 Gene3D Peptidase S8/S53 domain 146 639 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2878 770 CDD PA_subtilisin_like 357 487 - -
Sed08g2878 770 CDD Peptidases_S8_3 112 592 IPR034197 -
Sed08g2878 770 Pfam PA domain 400 472 IPR003137 -
Sed08g2878 770 ProSiteProfiles Serine proteases, subtilase domain profile. 118 626 - -
Sed08g2878 770 Pfam Subtilase family 143 618 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed08g2878 770 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Sed08g2878 770 PRINTS Subtilisin serine protease family (S8) signature 556 572 IPR015500 -
Sed08g2878 770 PRINTS Subtilisin serine protease family (S8) signature 143 162 IPR015500 -
Sed08g2878 770 Gene3D - 351 495 - -
Sed08g2878 770 FunFam subtilisin-like protease SBT1.5 351 495 - -
Sed08g2878 770 FunFam Subtilisin-like protease SBT1.5 145 375 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1334 Sed-Chr3:8497376 Sed08g2878 Sed-Chr8:39924691 1.10E-273 dispersed
Sed03g1335 Sed-Chr3:8505527 Sed08g2878 Sed-Chr8:39924691 0.00E+00 dispersed
Sed03g1336 Sed-Chr3:8510690 Sed08g2878 Sed-Chr8:39924691 7.00E-63 dispersed
Sed03g1337 Sed-Chr3:8513307 Sed08g2878 Sed-Chr8:39924691 0.00E+00 dispersed
Sed05g2099 Sed-Chr5:34142209 Sed08g2878 Sed-Chr8:39924691 1.40E-263 dispersed
Sed08g2876 Sed-Chr8:39910216 Sed08g2878 Sed-Chr8:39924691 1.80E-252 dispersed
Sed08g2878 Sed-Chr8:39924691 Sed11g1173 Sed-Chr11:27638466 1.00E-229 dispersed
Sed08g2878 Sed-Chr8:39924691 Sed08g2884 Sed-Chr8:39952090 3.10E-279 proximal
Sed08g2877 Sed-Chr8:39916164 Sed08g2878 Sed-Chr8:39924691 6.90E-263 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2878 - - - 0.0