Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2884 ATGGATGCCTTCAATCTCTCTCCATGCTTTTTGATATTCATTCTTCTCACGTGTTCGCAAACATGCACCATTGCCACCAAAAAGCCTTACATTGTTTACTTGGGATCGCATTCTCCCGAGTTGAATACTACTTTGTCAAATCGTCGACGTATTACGGAGTCTCATTATGATTTATTGGAATCTGTGTTGGAAAGCAAAGAAGTAGCCAAAGAAGCAATATTCTACTCATACAACAGATTCATCAATGGCTTTGCTGCCATGCTGGATGAAAATCAAGCAGCTGATCTTGAAAATTTTCCAAATGTCGTTTCAGTTTTTGAATGTCAAGCTAGAAAATTGCACACAACGCGATCATGGAACTTTCTCGGAATGGAAGAACATGAAGAAACAACTTCGAACTCCATTTGGAATGTTGCGAAGTTTGGGGAAGATACAATCATAGCTAACTTCGACACAGGTGTTTGGCCAGAAGCAAAGAGCTTTAGTGATGAAGGGTATGGTCCTGTCCCCTCAAGGTGGAAGGGAACTTGTCAAAATGATACAGACCCCAGCTTCCATTGCAATAGGAAGTTGATTGGAGCAAGATACTTCAACAAAGGCTATGGTAACCTCACGGTTACCTTCAATTCTTCAAGAGACAATACAGGCCATGGAACCCACACTTTATCCATAGCTGGTGGCAATTTCTTACCCGGAGCTAATGTCTTCGGCATGGGCAATGGAACTGCCAAAGGTGGTTCCCCTCGAGCCCGCGTCGCATCCTACAAGGTTTGTTGGCCAGCAGAAGGTGGTGAGTGTTTGGACCCAAATACCTTAGCTGCCTATGAAGCTGCAATTAGCGATGGCGTTGACGTCATCTCGATTTCCGTCGGTGGACAGCCTAAAGAGTTTTTTAGTGATGCGCTCACTGTAGGAGCCTTTCATGCAGTTCAGCATGGTATTGTTGTTGTTTGCTCAGCTGGGAACTTAGGACCTACTTATGGGACTGTATCAAATGTGTCGCCATGGGTTCTAACTGTTGGAGCTAGTACCATTGATAGGGATTTCACCAGTTTTGTTGTCCTGGGGAACAAGATGAAACTCAAGGGAGCAAGCTTATCTTCTAAGGCATTGCCATTTGACAAGTTCTACCCTTTAATCAATGCTGTGGATGCAAAAGCCAACAATGTCTCTAATGATGATGCGGAAGATTGTAATGAGGGATCACTCGATCCCATGAAGTTGGCAGGGAAGATTGTGGTTTGCCGTCGAGGGGGTATTTCAAGAGTGTCCAAGGGCTATGTAGTTTCCCAAGCAGGGGCCGTCGGGATGATTTTGGTTAACGACGAGCACAACGGGAATGCATTAGTAACTGATCTGCACCTCCTTCCAGCTACCCATGTAACCTACAACGACAGCTTATCCATCATCGAATACATAAATTGCACAGTGAAGCCGATGGCTTACATCAGTGCTGAGCAGACAGAACTAGACATCAAACCATCCCCAGTAATGGCTGGTTTCTCATCAAGAGGCCCCAATACAATAGAGGAGTCAATCCTTAAGCCTGATATAACAGCACCAGGAGTGAATATAATAGCGGCTTACCCCGACAAAATACCGTTGACAGAAGTACCGATCGACGAGCATCGAGCTGCTTTCAAGGTAGATTCTGGCACATCCATGGCCTGCCCTCATGTTGCAGGCATTGTAGGCCTTCTCAAAACCCTAAATCCCAAATGGAGTCCAGCCGCCATTAAATCTGCAATCATGACCACAGCCGAAACAAGAGACAATACCTTACGTCCAATCCTAGACTTCACCGAACGCGAAGCAACTCCATTTGCATACGGCGCCGGCCATGTTCATCCAAACCGTGCGATGGACCCGGGCCTCGTTTACGACACCACAATCGACGATTACCTAAATTTCATGTGTGCTCGAGGCTACAACGAAACACAGATCAACAAATTATCAAATAAGATGTTCGTTTGCGATCGTTCATTCAAAGTGACGGATCTAAATTACCCGTCGATCTCAGTGACGGATCTGAAATCGGGGCCTGTGACGATCAATCGGAAGCTGAAGAACGTGGGGAGTGCAGGGACGTATGTTGCAGAAGTGAAGGCGCCTTTGGAAGTTGAAATCACGGTTGAGCCGAGTACAATGGAATTTGCCGCCATTGATGAAGAGAAGAGCTTCAAGGTGGGGTTGCAGAGCACTGGAAAGGGAAAACCAAAGGGTTATGTGTTTGGGGAATTAATATGGTCTGATGGCAAACACCGTGTTAGGAGCCCAATTGCTGTTAATGTAGCCTAA 2298 45.78 MDAFNLSPCFLIFILLTCSQTCTIATKKPYIVYLGSHSPELNTTLSNRRRITESHYDLLESVLESKEVAKEAIFYSYNRFINGFAAMLDENQAADLENFPNVVSVFECQARKLHTTRSWNFLGMEEHEETTSNSIWNVAKFGEDTIIANFDTGVWPEAKSFSDEGYGPVPSRWKGTCQNDTDPSFHCNRKLIGARYFNKGYGNLTVTFNSSRDNTGHGTHTLSIAGGNFLPGANVFGMGNGTAKGGSPRARVASYKVCWPAEGGECLDPNTLAAYEAAISDGVDVISISVGGQPKEFFSDALTVGAFHAVQHGIVVVCSAGNLGPTYGTVSNVSPWVLTVGASTIDRDFTSFVVLGNKMKLKGASLSSKALPFDKFYPLINAVDAKANNVSNDDAEDCNEGSLDPMKLAGKIVVCRRGGISRVSKGYVVSQAGAVGMILVNDEHNGNALVTDLHLLPATHVTYNDSLSIIEYINCTVKPMAYISAEQTELDIKPSPVMAGFSSRGPNTIEESILKPDITAPGVNIIAAYPDKIPLTEVPIDEHRAAFKVDSGTSMACPHVAGIVGLLKTLNPKWSPAAIKSAIMTTAETRDNTLRPILDFTEREATPFAYGAGHVHPNRAMDPGLVYDTTIDDYLNFMCARGYNETQINKLSNKMFVCDRSFKVTDLNYPSISVTDLKSGPVTINRKLKNVGSAGTYVAEVKAPLEVEITVEPSTMEFAAIDEEKSFKVGLQSTGKGKPKGYVFGELIWSDGKHRVRSPIAVNVA 765
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39952090 39956931 - Sed0023220.1 Sed08g2884 724660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2884 765 Pfam Peptidase inhibitor I9 30 114 IPR010259 -
Sed08g2884 765 ProSitePatterns Serine proteases, subtilase family, serine active site. 552 562 IPR023828 -
Sed08g2884 765 ProSiteProfiles Serine proteases, subtilase domain profile. 118 621 - -
Sed08g2884 765 FunFam Subtilisin-like protease SBT1.5 144 363 - -
Sed08g2884 765 FunFam subtilisin-like protease SBT1.5 346 490 - -
Sed08g2884 765 SUPERFAMILY Subtilisin-like 113 625 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2884 765 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 17 114 IPR037045 -
Sed08g2884 765 Pfam Fibronectin type-III domain 666 762 IPR041469 -
Sed08g2884 765 FunFam Subtilisin-like protease SBT5.3 19 114 - -
Sed08g2884 765 FunFam Subtilisin-like protease SBT1.5 638 765 - -
Sed08g2884 765 CDD PA_subtilisin_like 353 483 - -
Sed08g2884 765 Gene3D - 638 764 - -
Sed08g2884 765 Gene3D - 346 490 - -
Sed08g2884 765 SUPERFAMILY PA domain 399 466 IPR046450 -
Sed08g2884 765 CDD Peptidases_S8_3 112 587 IPR034197 -
Sed08g2884 765 Gene3D Peptidase S8/S53 domain 144 634 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Sed08g2884 765 Pfam Subtilase family 142 596 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Sed08g2884 765 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 30 760 IPR045051 -
Sed08g2884 765 PRINTS Subtilisin serine protease family (S8) signature 142 161 IPR015500 -
Sed08g2884 765 PRINTS Subtilisin serine protease family (S8) signature 213 226 IPR015500 -
Sed08g2884 765 PRINTS Subtilisin serine protease family (S8) signature 551 567 IPR015500 -
Sed08g2884 765 Pfam PA domain 377 468 IPR003137 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g2277 Sed-Chr3:17157814 Sed08g2884 Sed-Chr8:39952090 3.60E-142 dispersed
Sed08g2877 Sed-Chr8:39916164 Sed08g2884 Sed-Chr8:39952090 6.70E-258 dispersed
Sed08g2884 Sed-Chr8:39952090 Sed11g1173 Sed-Chr11:27638466 5.70E-209 dispersed
Sed08g2878 Sed-Chr8:39924691 Sed08g2884 Sed-Chr8:39952090 3.10E-279 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2884 - - - 0.0