Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2886 ATGGCTTCCACTGGGAATCCAAGCCCAAATCCAGCGAACCCTCAATTTGATGTGCAGAAATTGTTTAAACCCAACATTTCAAACCCTACGCCGAGCTCCCAAAACCCTACCCTCATGAATTCGCCTCCATTTCCGCCTCCTTCGTCTTCTTACCCTCCTCCCACTGGTCCTTTCTCATACCCACTTCAGAACGCTCCATTTCATCATCCCTACCTTTCTCCTGTTCCCTACTCTCACGACCAGTTCTCTAATCTCCATCAACAGCGGTCTCTTTCTTACCCGACCCCGCCGCTTCAGCCTTCGCCGCCACCGGTTAATCTCGTTGTTCCTCAGAACAATCCGGCTCAGAGCTCGGGTGCTCGGATAATGGCCATGATTAGAGCCCCTGGCTCTAATCTTGAGCCGTCTCTTCAGCCCTCTGCCCCATTGGGTTTGATGCCGTCTCCGTCTTCGGGCGTTCCGGAATCTCCAACGCCTTTGAATGTTCCCATCATGACTACCATTCCCATGATGCAGGGGGGCAATCCTGGGATTTCTCCTACCGGGCCGATTCGGACGCCTAGCAGTAAGCTTCCGAAAGGGCGGCATTTGATTGGTGATCATGTGGTGTATGATGTCAATGTTAGGTTGCAAGGAGAGATCCAGCCACAGCTCGAAGTGACGCCGATTACAAAGTATGGTTCGGATCCTCAGCTTGTGTTGGGGCGTCAAATTGCAGTCAACAAGACATATATATGCTATGGTTTGAAACAGGGCAACATTCGAGTTCTTAATATTAATACTGCGTTAAGATCTTTGTTTCGAGGCCATGAAAAGAGGGTCACCGACATGGCATTCTTCGCCGAAGATGTTCATCTTTTGGCTAGTGTTGATGTAGGTGGACGAGTTTATGTTTGGAAGATTTCTGAGGGCCCTGATGAAGAAGCTAAACCGCAAATCACTGGGAAGGTCGTTATCTCCCTGCACATGGAAGGAGGAGAGGGGGAAATTGTGCATCCACGAGTTTGCTGGCATTGTCACAAACAGGAAGTTTTGGTAGTTGGATTTGGGAAGTCTGTCCTCAGAATTGACACAACCAAAGTTGGGAAGGGTGAAAGCTTTTCTGCCGAAACTCCTCTCAAATTTTCTCTTGACAAGTTGATTGATGGCGTCCAACTTGTTGGTAAACATGATGGAGAAGTGACTGAGTTGTCCATGTGCCAGTGGATGACTTCTCGGCTGGTTTCTGCATCTATGGATGGGACGATCAAAATCTGGGAAGATCGCAAGGGATCACCTTTGCTAGTTTTGAGACCACATGATGGCCAACCTGTTAATGCGGCTACTTTCTTGACTGCTCCAAATCGACCTGATCACATTATACTCATAACAGCGGGGCCTCTGAATCGAGAAGTGAAAATATGGTCATCTGCAAGCGAGGAAGGTTGGCTGCTTCCTAGTGATGCAGAATCATGGAAGTGCAGCCAGACCCTAGAGTTAAAGAGTTCTGCTGAAAGTAAAGTTGAAGAGGCTTTCTTTAATCAAATAGTAGCATTGTCTCAAGCTGGCCTTCTTTTACTTGCTAATGCTAAGAAGAATGCAATATATGCCATTCATTTAGATTATGGTCTTAATCCAACAACGACACGGATGGATTACATAGCAGAGTTCACCGTCACAATGCCCATTTTAAGTTTCACTGGAACAAGTGAAATATTAGACCGTCTAACACACGTTGTCCAAGTATATTGCGTTCAAACACAAGCTATACAACAATATGCCTTAGATTTATCTCAGTGCTTACCCCCACCGTTGGACAATATTGGGTTAGAGAAGGCAGATTCGAATGTTTCACAAGATTCTGCTGGTGTTGAAGGACTGGCAGCATTGTTTCCTTCTGGTAGCAAACCAACTGAGACACCCTTAACCAGTTCTACACCCAGGGCTTCAATACTAGCCAATGGCTCTGAAAGTACTAGTGTAGAAGGATATCCTGCAAGCACCACTTCTCAAGATGCAGTGTCCATTGGTAATATAGAATCTAAACCTGCTACGTTGTCAACTGTAGCTAGTAACACAGACATTGCCTCTGCTGCATCACCTTCTTTTCCTTTGAGCCCGCGCTTGTCTAGAAATCTATCTGATTTTAGAAGTCCTGTGGGTGCCTTTGAGCCTATTACTGCAGGTAGTGATCATGCTGGTGACCGACGTGGTGTTGACTATCCAGTCAACAGACAAATGGATGCCATACCCACAAATTTGTCTGAAGTGTCTTCCTTGAATGATGAGTCCAGAAACAATGAGGAGAAAATTGCACGGGATGATTTGTCTAATGTTCTTAATCCTCCTACTGTGTTTAAGCATCCAACTCATCTGATCACCCCCTCTGAGATACTGATGGCCGTTTCTTCCTCTGAAACCACTAATGTCAATGAAGGTAAGAGTGAGGGAGAGACAATTATCCAGGATGTAGTTGTTAACAATGATGTTGAAGATACTGAGCTTGAGGTTAAAGAAGTTGGTGAAATGAGGCAGAATGGTGAATATGGTAGTAGAGGTGGGCCTCTGGAGAACAAGGAAAAGTACTTCTGCTCACAAGCTTCAGATCTGGGTATGGAAGTGGCCCGAGAGTGTTGCGCTCTATCATCTGAAGCTTATATCATTGAGGAAGCCCCACAAGTTGATGCTAATATAATGGATACAGAAGTAGATTCCCAAGCTGGTGAGGGAGATAGAACATCAGCCAATGATGTGTCTGAAAAGGTTTCTGAATCATCTATATCAATGCCTCCGCAAATTCCAACACCTAATACAAAAGGGAAAAAGAACAAGGGGAAAAATTCTCAAGCCTCAGGCTTGGTTTCCCCTTCTTCAAGTGCATTCAATTCTAATGAATCTTCTACTGAACCTCGTGGTAGTTCAAGCCTTCCCCCATCTGATGCTGCGTTGTCTTCTTTTTTGACCATCCAAGATACGTTGAATCAGATAATAAGCACTCAGAAAGAAATGCAAAAGCAGATGCAGACGACCCTTTCTGTTCCAGTCACTAAAGAAGGTAAACGGCTGGAGGCAGCTCTTGGTCGAAGCATGGAGAAGGCCTTGAAAGCGAATAATGATGCATTGTGGGCTCGAATTCAAGAAGAAAGTGCTAAAAATGAGAAATTGTTGAGAGAGACTACACAGAAGATAACTAGCCTTGTTACAAACTTTGTGAACAAGGACTTGCCTGCCTATGTAGAGAAAGCTTTGAAGAAGGAAATGGCTGCCATTGGACCTGCTGTGGTTCGCTCAATAACACCAGCTATCGAGAAAACAATTTCTTCTTCCATCACTGATTCCTTTCAGAGAGGAGTAGGTGATAAGGCAGTGAATCAACTAGAGAAATCTGTTAACTCAAAACTTGAAGCTACCGTTGCAAGGCAAATTCAAGCACAATTTCAAACCTCTGGCAAGCAAGCTCTGCAGGACGCATTAAAATCTAATTTTGAAGCATCAGTAATTCCTGCCTTTGAAATGTCGTGCAAAACCATGTTTGAGCAAGTAGATTCTACATTCCAGAAAGGACTGGTTGAACATTCAGCTGCAGCTCAGCAGCACTTCGACTCATCACATTCTTCACTGGCACTTACTTTGAGGGATTCTATAAATTCAGCATCAACAATGGCTCAGTCGTTGAATGGAGAATTGGCTGAAGGCCAAAGAAAACTGATAGCCCTTGCAACTGCAGGAGCAAATGCTAATTCCATAAATCCATTGGTTACCCAGCTAAGCAATGGACCATTGGGTGCTCTCCATGAGAAGGTTGAGGTTCCTTTGGATCCTACAAAAGAACTTTCGAGAATGCTATCAGAAGGGAAATATGAGGAAGCTTTCACCACTGCTTTACAGAGAAGTGATGTGAACATTGTCTCTTGGCTATGTTCTCAGGTTGATCTTAGGGCTATTCTGTCAAATTCGCTTGCTTTGAGTCAAGGAGTACTGCTGTCTCTTCTGCAACAGTTAGCTTGTGATATCAACACGGATAGATCCCGGAAAATTGCATGGATGACTGATGTGGCTGCTGCCATAAATCCCACGGACCCGATGATAGCGATGCACGTACGACCGATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGGGCTTGCCAACGATCTCTCCTGTTGAGCTTTCCGGCATTCGTGTTATCATGCATGTTGTCAACTCCATGCTGGTAACTTGTAAATGA 4212 44.82 MASTGNPSPNPANPQFDVQKLFKPNISNPTPSSQNPTLMNSPPFPPPSSSYPPPTGPFSYPLQNAPFHHPYLSPVPYSHDQFSNLHQQRSLSYPTPPLQPSPPPVNLVVPQNNPAQSSGARIMAMIRAPGSNLEPSLQPSAPLGLMPSPSSGVPESPTPLNVPIMTTIPMMQGGNPGISPTGPIRTPSSKLPKGRHLIGDHVVYDVNVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEEAKPQITGKVVISLHMEGGEGEIVHPRVCWHCHKQEVLVVGFGKSVLRIDTTKVGKGESFSAETPLKFSLDKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKGSPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAESWKCSQTLELKSSAESKVEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDYGLNPTTTRMDYIAEFTVTMPILSFTGTSEILDRLTHVVQVYCVQTQAIQQYALDLSQCLPPPLDNIGLEKADSNVSQDSAGVEGLAALFPSGSKPTETPLTSSTPRASILANGSESTSVEGYPASTTSQDAVSIGNIESKPATLSTVASNTDIASAASPSFPLSPRLSRNLSDFRSPVGAFEPITAGSDHAGDRRGVDYPVNRQMDAIPTNLSEVSSLNDESRNNEEKIARDDLSNVLNPPTVFKHPTHLITPSEILMAVSSSETTNVNEGKSEGETIIQDVVVNNDVEDTELEVKEVGEMRQNGEYGSRGGPLENKEKYFCSQASDLGMEVARECCALSSEAYIIEEAPQVDANIMDTEVDSQAGEGDRTSANDVSEKVSESSISMPPQIPTPNTKGKKNKGKNSQASGLVSPSSSAFNSNESSTEPRGSSSLPPSDAALSSFLTIQDTLNQIISTQKEMQKQMQTTLSVPVTKEGKRLEAALGRSMEKALKANNDALWARIQEESAKNEKLLRETTQKITSLVTNFVNKDLPAYVEKALKKEMAAIGPAVVRSITPAIEKTISSSITDSFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDALKSNFEASVIPAFEMSCKTMFEQVDSTFQKGLVEHSAAAQQHFDSSHSSLALTLRDSINSASTMAQSLNGELAEGQRKLIALATAGANANSINPLVTQLSNGPLGALHEKVEVPLDPTKELSRMLSEGKYEEAFTTALQRSDVNIVSWLCSQVDLRAILSNSLALSQGVLLSLLQQLACDINTDRSRKIAWMTDVAAAINPTDPMIAMHVRPIFEQVYQILNHQRGLPTISPVELSGIRVIMHVVNSMLVTCK 1403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39965803 39976721 + Sed0022328.1 Sed08g2886 724662

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2886 1403 FunFam enhancer of mRNA-decapping protein 4 219 534 - -
Sed08g2886 1403 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 40 1403 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Sed08g2886 1403 MobiDBLite consensus disorder prediction 897 973 - -
Sed08g2886 1403 FunFam Enhancer of mRNA-decapping protein 4 1315 1401 - -
Sed08g2886 1403 MobiDBLite consensus disorder prediction 36 60 - -
Sed08g2886 1403 Gene3D - 215 528 IPR015943 GO:0005515(InterPro)
Sed08g2886 1403 Gene3D - 1314 1402 IPR044938 -
Sed08g2886 1403 SMART WD40_4 423 469 IPR001680 GO:0005515(InterPro)
Sed08g2886 1403 SMART WD40_4 260 300 IPR001680 GO:0005515(InterPro)
Sed08g2886 1403 SMART WD40_4 383 420 IPR001680 GO:0005515(InterPro)
Sed08g2886 1403 SUPERFAMILY WD40 repeat-like 241 500 IPR036322 GO:0005515(InterPro)
Sed08g2886 1403 MobiDBLite consensus disorder prediction 901 973 - -
Sed08g2886 1403 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 429 IPR001680 GO:0005515(InterPro)
Sed08g2886 1403 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1272 1373 IPR049404 -
Sed08g2886 1403 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 220 533 IPR032401 -
Sed08g2886 1403 MobiDBLite consensus disorder prediction 1 62 - -
Sed08g2886 1403 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2886 K12616 - - csv:101211283 2341.61
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1339 Sed-Chr3:8530455 Sed08g2886 Sed-Chr8:39965803 8.20E-260 dispersed
Sed03g1341 Sed-Chr3:8550772 Sed08g2886 Sed-Chr8:39965803 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43