Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2887 ATGTCGCTGAGTCTTGTTTGCACGAGCCTCAAGTCTGTAATCTTCACAAATAAACTCAATTTCCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTTTATTGGGTATCATACCGTTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTGGCTTTTTACACTGGACCTACAGTTGGCGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATTTTTGCACTGAAAAACAAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTACTGGTGCTTGGTTGTGCATTCTTCTGCGGTGGGATTGTTTTCCACAAAAAGGAACAGACTTTCAATAAGGCAGCTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTTCTTTTTCCTGCTCTTCTTCACTACACCCACAGCGAAACCCATTTTGGGAAGTCAGAATTGGCACTCTCTAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTTCAATTGAAAACGCAGAGGAATCTTTATTCTTCCGTTTATGAGGAGGAAACTCAAAGTGACGAAAGCTCATATGAAGCTGAAGCTCCTGAGATCTCCATGTGGGAATCAATTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAGAATACTTGGTCGATGCAATCGAAGTTGCATCTGAGTCATTGAAAATCCCAATGCCGTTTATTAGTGTTATATTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTGTGAAAGATAAGCTTGATATTTCTCTGGGTGTGGCTATCGGATCATCAACCCAGATATCTATGTTCGGGATTCCTTTCTGTGTGGTAACTGGGTGGATTATGGGACAACCAATGGACTTGAACTTTAAACTCTTCGAGACAGCAACACTTTTTATAACTGTAATTGTAGTAGCTTTCTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTTATGCTTATCCTTTGTTATCTGATAGTCGCAGCTAGTTTTTTCGTGCATGTGGATCCTCCTTTCCCCGAGAACAAACTGGGGAGTTTGAAAGCGTAG 1173 41.86 MSLSLVCTSLKSVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKNKMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFHKKEQTFNKAAAVVNSGLLLMAVMGLLFPALLHYTHSETHFGKSELALSRFSSCIMLLAYAAYLFFQLKTQRNLYSSVYEEETQSDESSYEAEAPEISMWESIIWLSILTAWISVLSEYLVDAIEVASESLKIPMPFISVILLPIVGNAAEHASAIMFAVKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPFPENKLGSLKA 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39978048 39992102 + Sed0010573.1 Sed08g2887 724663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2887 390 Pfam Sodium/calcium exchanger protein 230 372 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2887 390 Pfam Sodium/calcium exchanger protein 41 196 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2887 390 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 6 378 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed08g2887 390 Gene3D - 70 210 IPR044880 -
Sed08g2887 390 Gene3D - 217 374 IPR044880 -
Sed08g2887 390 FunFam Vacuolar cation/proton exchanger 70 209 - -
Sed08g2887 390 FunFam Vacuolar cation/proton exchanger 218 374 - -
Sed08g2887 390 NCBIfam calcium/proton exchanger 23 373 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g0605 Sed-Chr1:4335970 Sed08g2887 Sed-Chr8:39978048 5.20E-158 dispersed
Sed03g2497 Sed-Chr3:30291415 Sed08g2887 Sed-Chr8:39978048 8.00E-94 dispersed
Sed05g3038 Sed-Chr5:40792720 Sed08g2887 Sed-Chr8:39978048 6.40E-155 dispersed
Sed06g0044 Sed-Chr6:253475 Sed08g2887 Sed-Chr8:39978048 5.40E-112 dispersed
Sed06g2276 Sed-Chr6:46282696 Sed08g2887 Sed-Chr8:39978048 8.60E-154 dispersed
Sed08g2887 Sed-Chr8:39978048 Sed08g2890 Sed-Chr8:39979829 1.60E-215 dispersed
Sed08g2887 Sed-Chr8:39978048 Sed08g2888 Sed-Chr8:39978048 4.00E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2887 K07300 - csv:101205761 624.009