Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2889 ATGTCGCTGAGTCTTGTTTGCACGAGCCTCAAGTCTGTAATCTTCACAAATAAACTCAATTTCCTTATGCCTTTTGGGCCTCTTGCAATTCTTGTGGATAAGTTGGCTGGACACAATAGTTGGGTCTTCTTCCTGAGTTTATTGGGTATCATACCGTTGGCTGAGCGGTTAGGTTATGCCACAGAGCAGCTGGCTTTTTACACTGGACCTACAGTTGGCGGTCTACTAAATGCTACTTTTGGAAATGCAACAGAACTGATTATATCAATTTTTGCACTGAAAAACAAAATGATACGTGTTGTTCAGCTATCATTACTAGGCTCAATTCTGTCGAACATGTTACTGGTGCTTGGTTGTGCATTCTTCTGCGGTGGGATTGTTTTCCACAAAAAGGAACAGACTTTCAATAAGGCAGCTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTTCTTTTTCCTGCTCTTCTTCACTACACCCACAGCGAAACCCATTTTGGGAAGTCAGAATTGGCACTCTCTAGATTCAGCAGTTGCATTATGCTTCTGGCTTATGCTGCTTATCTTTTCTTTCAATTGAAAACGCAGAGGAATCTTTATTCTTCCGTTTATGAGGAGGAAACTCAAAGTGACGAAAGCTCATATGAAGCTGAAGCTCCTGAGATCTCCATGTGGGAATCAATTATCTGGCTATCAATTTTGACTGCCTGGATCTCTGTTCTATCAGAATACTTGGTCGATGCAATCGAAGTTGCATCTGAGTCATTGAAAATCCCAATGCCGTTTATTAGTGTTATATTGCTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTGTGAAAGATAAGCTTTTTCTTGGCAGGATATTTCTCTGGGTGTGGCTATCGGATCATCAACCCAGATATCTATGTTCGGGATTCCTTTCTGTGTGGTAA 960 41.98 MSLSLVCTSLKSVIFTNKLNFLMPFGPLAILVDKLAGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKNKMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFHKKEQTFNKAAAVVNSGLLLMAVMGLLFPALLHYTHSETHFGKSELALSRFSSCIMLLAYAAYLFFQLKTQRNLYSSVYEEETQSDESSYEAEAPEISMWESIIWLSILTAWISVLSEYLVDAIEVASESLKIPMPFISVILLPIVGNAAEHASAIMFAVKDKLFLGRIFLWVWLSDHQPRYLCSGFLSVW 319
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 39978048 39992734 + Sed0010573.3 Sed08g2889 724665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2889 319 Gene3D - 70 210 IPR044880 -
Sed08g2889 319 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 6 292 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Sed08g2889 319 FunFam Vacuolar cation/proton exchanger 70 209 - -
Sed08g2889 319 Pfam Sodium/calcium exchanger protein 41 196 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2889 319 Pfam Sodium/calcium exchanger protein 230 291 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Sed08g2889 319 NCBIfam calcium/proton exchanger 23 293 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2888 Sed-Chr8:39978048 Sed08g2889 Sed-Chr8:39978048 9.20E-177 tandem
Sed08g2889 Sed-Chr8:39978048 Sed08g2890 Sed-Chr8:39979829 2.50E-158 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2889 K07300 - csv:101205761 453.751