Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2893 | ATGGCCTCTATTGAGTTGGAGCAAGAGCACCTACACTTCGCACACGCTATGCAACTGGCCACCTCCTTGGCACTGCCTATGACACTCAACGCGGCCTTCGAGCTTGGCGTGTTCGAGATCTTGGCCAAGCCCGGGAATGGAGCCAAGCTCTCTTCAACCGAGATTGCGGCCCAGATAACCACCACGAACCCGAATGCAGCGTCGATGCTCGATCGGATCCTGAGGCTTCTGGCTAGCCACTCGGTGGTGGGCTGCTCTATGGCTGCTGACCAACGTGGAAATTTGCAGAGACTCTATAGCCTCACGCCCGTTTCTAAGTTCTATGTTCCTAATGAAGATGGTGTGTCCTTAGGTCCCATCATATCCCTGACTCATGAGAAAGCCTTTCTTCAAGGCTGGAGTGAGCTGAAGAATGCAATAGTGGAAGGAGGGGTTCCTTTCAATAGGGCACATGGAGGAGCACATGTGTTTGAATACCTTGGTATGGATCCAAGATTCAACCAAGTTTTCAACAATGCAATGTTGAATCACACCACTATTGTGGCAAAGAAGATTGTTGAGTCCTATGATGGCTTTGCAAACATCAACCAACTGGTTGATGTTGGTGGTGGCCTAGGGACTACCCTTCAATTCATCACTTCTGCATACCCTTCCATCAAAGCCATCAACTTCGACCTGCCTCATGTTATTCGCCACGCCCCTCCCTATCCCGGTGTAGAACACGTAGGAGGAGATATGTTTCTCAGTGTTCCAAAAAGTGATACCATTTTCATGAAGTGGATACTTCATGATTGGAGCGACGAGAATTGCATAAAGTTGTTAAAGAATTGTCATGCATCAATCCCAATTAATGGAAAGATAATTGTAATAGACTCTGTGATTCCAACCATGCCGGAGACTACAATTTTAGCAAAAGACCTTAGCCAATTTGATGTGATAATGTCAACTCAAATTACAGGAGGAAAAGAGCGAACATACGAAGAATTTAATGCTCTTGCCATGAAAGCTGGATTTAAACCCATTATATTCAAATGTGCTATATTGAATCTTTGGATTATGGAATTATTTAAATGA | 1074 | 45.16 | MASIELEQEHLHFAHAMQLATSLALPMTLNAAFELGVFEILAKPGNGAKLSSTEIAAQITTTNPNAASMLDRILRLLASHSVVGCSMAADQRGNLQRLYSLTPVSKFYVPNEDGVSLGPIISLTHEKAFLQGWSELKNAIVEGGVPFNRAHGGAHVFEYLGMDPRFNQVFNNAMLNHTTIVAKKIVESYDGFANINQLVDVGGGLGTTLQFITSAYPSIKAINFDLPHVIRHAPPYPGVEHVGGDMFLSVPKSDTIFMKWILHDWSDENCIKLLKNCHASIPINGKIIVIDSVIPTMPETTILAKDLSQFDVIMSTQITGGKERTYEEFNALAMKAGFKPIIFKCAILNLWIMELFK | 357 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 40014882 | 40021138 | - | Sed0007952.1 | Sed08g2893 | 724669 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2893 | 357 | SUPERFAMILY | Winged helix DNA-binding domain | 12 | 111 | IPR036390 | - | |
Sed08g2893 | 357 | Gene3D | - | 2 | 108 | IPR036388 | - | |
Sed08g2893 | 357 | FunFam | Caffeic acid O-methyltransferase | 109 | 357 | - | - | |
Sed08g2893 | 357 | Pfam | O-methyltransferase domain | 133 | 339 | IPR001077 | GO:0008171(InterPro) | |
Sed08g2893 | 357 | Pfam | Dimerisation domain | 27 | 78 | IPR012967 | GO:0046983(InterPro) | |
Sed08g2893 | 357 | FunFam | Caffeic acid 3-O-methyltransferase | 1 | 108 | - | - | |
Sed08g2893 | 357 | ProSiteProfiles | SAM-dependent O-methyltransferase class II-type profile. | 17 | 357 | IPR016461 | GO:0008168(InterPro) | |
Sed08g2893 | 357 | PANTHER | O-METHYLTRANSFERASE | 14 | 341 | IPR016461 | GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER) | |
Sed08g2893 | 357 | Gene3D | Vaccinia Virus protein VP39 | 110 | 357 | IPR029063 | - | |
Sed08g2893 | 357 | SUPERFAMILY | S-adenosyl-L-methionine-dependent methyltransferases | 114 | 345 | IPR029063 | - | |
Sed08g2893 | 357 | PIRSF | O-mtase | 1 | 357 | IPR016461 | GO:0008168(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0012 | Sed-Chr2:2940538 | Sed08g2893 | Sed-Chr8:40014882 | 1.20E-132 | dispersed | |
Sed08g2893 | Sed-Chr8:40014882 | Sed08g2895 | Sed-Chr8:40014882 | 2.30E-205 | dispersed | |
Sed08g2893 | Sed-Chr8:40014882 | Sed08g2894 | Sed-Chr8:40014882 | 2.30E-205 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2893 | K13066 | - | csv:101214916 | 495.738 |