Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2893 ATGGCCTCTATTGAGTTGGAGCAAGAGCACCTACACTTCGCACACGCTATGCAACTGGCCACCTCCTTGGCACTGCCTATGACACTCAACGCGGCCTTCGAGCTTGGCGTGTTCGAGATCTTGGCCAAGCCCGGGAATGGAGCCAAGCTCTCTTCAACCGAGATTGCGGCCCAGATAACCACCACGAACCCGAATGCAGCGTCGATGCTCGATCGGATCCTGAGGCTTCTGGCTAGCCACTCGGTGGTGGGCTGCTCTATGGCTGCTGACCAACGTGGAAATTTGCAGAGACTCTATAGCCTCACGCCCGTTTCTAAGTTCTATGTTCCTAATGAAGATGGTGTGTCCTTAGGTCCCATCATATCCCTGACTCATGAGAAAGCCTTTCTTCAAGGCTGGAGTGAGCTGAAGAATGCAATAGTGGAAGGAGGGGTTCCTTTCAATAGGGCACATGGAGGAGCACATGTGTTTGAATACCTTGGTATGGATCCAAGATTCAACCAAGTTTTCAACAATGCAATGTTGAATCACACCACTATTGTGGCAAAGAAGATTGTTGAGTCCTATGATGGCTTTGCAAACATCAACCAACTGGTTGATGTTGGTGGTGGCCTAGGGACTACCCTTCAATTCATCACTTCTGCATACCCTTCCATCAAAGCCATCAACTTCGACCTGCCTCATGTTATTCGCCACGCCCCTCCCTATCCCGGTGTAGAACACGTAGGAGGAGATATGTTTCTCAGTGTTCCAAAAAGTGATACCATTTTCATGAAGTGGATACTTCATGATTGGAGCGACGAGAATTGCATAAAGTTGTTAAAGAATTGTCATGCATCAATCCCAATTAATGGAAAGATAATTGTAATAGACTCTGTGATTCCAACCATGCCGGAGACTACAATTTTAGCAAAAGACCTTAGCCAATTTGATGTGATAATGTCAACTCAAATTACAGGAGGAAAAGAGCGAACATACGAAGAATTTAATGCTCTTGCCATGAAAGCTGGATTTAAACCCATTATATTCAAATGTGCTATATTGAATCTTTGGATTATGGAATTATTTAAATGA 1074 45.16 MASIELEQEHLHFAHAMQLATSLALPMTLNAAFELGVFEILAKPGNGAKLSSTEIAAQITTTNPNAASMLDRILRLLASHSVVGCSMAADQRGNLQRLYSLTPVSKFYVPNEDGVSLGPIISLTHEKAFLQGWSELKNAIVEGGVPFNRAHGGAHVFEYLGMDPRFNQVFNNAMLNHTTIVAKKIVESYDGFANINQLVDVGGGLGTTLQFITSAYPSIKAINFDLPHVIRHAPPYPGVEHVGGDMFLSVPKSDTIFMKWILHDWSDENCIKLLKNCHASIPINGKIIVIDSVIPTMPETTILAKDLSQFDVIMSTQITGGKERTYEEFNALAMKAGFKPIIFKCAILNLWIMELFK 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40014882 40021138 - Sed0007952.1 Sed08g2893 724669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2893 357 SUPERFAMILY Winged helix DNA-binding domain 12 111 IPR036390 -
Sed08g2893 357 Gene3D - 2 108 IPR036388 -
Sed08g2893 357 FunFam Caffeic acid O-methyltransferase 109 357 - -
Sed08g2893 357 Pfam O-methyltransferase domain 133 339 IPR001077 GO:0008171(InterPro)
Sed08g2893 357 Pfam Dimerisation domain 27 78 IPR012967 GO:0046983(InterPro)
Sed08g2893 357 FunFam Caffeic acid 3-O-methyltransferase 1 108 - -
Sed08g2893 357 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 17 357 IPR016461 GO:0008168(InterPro)
Sed08g2893 357 PANTHER O-METHYLTRANSFERASE 14 341 IPR016461 GO:0008168(InterPro)|GO:0008171(PANTHER)|GO:0008757(PANTHER)|GO:0019438(PANTHER)|GO:0032259(PANTHER)
Sed08g2893 357 Gene3D Vaccinia Virus protein VP39 110 357 IPR029063 -
Sed08g2893 357 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 114 345 IPR029063 -
Sed08g2893 357 PIRSF O-mtase 1 357 IPR016461 GO:0008168(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0012 Sed-Chr2:2940538 Sed08g2893 Sed-Chr8:40014882 1.20E-132 dispersed
Sed08g2893 Sed-Chr8:40014882 Sed08g2895 Sed-Chr8:40014882 2.30E-205 dispersed
Sed08g2893 Sed-Chr8:40014882 Sed08g2894 Sed-Chr8:40014882 2.30E-205 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2893 K13066 - csv:101214916 495.738