Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2902 ATGGCGGACTCCGACAACGAATCCGGCGGCGGTCCGTCGCCGTCGCCGTCGCCGCGGGAGCAGGACAGGCTCCTCCCGATCGCGAACGTGGGGCGGATCATGAAGAAAGCCCTCCCTGGTAACGCCAAGATCTCCAAGGACGCCAAAGAGACCGTCCAAGAATGCGTATCGGAGTTCATCAGCTTCGTCACCGGCGAGGCCTCCGAAAAGTGCCACAAGGAGAAGCGGAAGACGATCAACGGCGACGATTTGCTTTGGGCCATGGCCACGCTAGGGTTCGAAGATTACGTCGATCCTCTCAAGCTTTATCTCCACCGCTACCGGGAATTTGAAGGCGAGAGGACCACGCTCGCCTCTCGCGACGCCGCCGACGGAGCTCCGAACACTGCTTACTTTGACGGCGGCGCCGAATTTGGGGGGGGCGGGATGGCAATGACGACGACCATGGATTTGCCTCCCAGCGTTTATGGTTCAAGTGGGCCGCGTTGGGATGGGCCTGGCTTTAGTTCTATGGGTCGGCCCAGGTAG 528 60.98 MADSDNESGGGPSPSPSPREQDRLLPIANVGRIMKKALPGNAKISKDAKETVQECVSEFISFVTGEASEKCHKEKRKTINGDDLLWAMATLGFEDYVDPLKLYLHRYREFEGERTTLASRDAADGAPNTAYFDGGAEFGGGGMAMTTTMDLPPSVYGSSGPRWDGPGFSSMGRPR 175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40048530 40049417 + Sed0009288.1 Sed08g2902 724678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2902 175 FunFam Nuclear transcription factor Y subunit B-3 13 133 - -
Sed08g2902 175 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 15 124 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed08g2902 175 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Sed08g2902 175 SUPERFAMILY Histone-fold 21 124 IPR009072 GO:0046982(InterPro)
Sed08g2902 175 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2902 175 MobiDBLite consensus disorder prediction 155 175 - -
Sed08g2902 175 Gene3D Histone, subunit A 14 132 IPR009072 GO:0046982(InterPro)
Sed08g2902 175 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Sed08g2902 175 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Sed08g2902 175 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Sed08g2902 175 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0338 Sed-Chr7:2593575 Sed08g2902 Sed-Chr8:40048530 4.10E-39 dispersed
Sed07g1707 Sed-Chr7:15719286 Sed08g2902 Sed-Chr8:40048530 5.80E-41 dispersed
Sed07g2408 Sed-Chr7:39930068 Sed08g2902 Sed-Chr8:40048530 1.40E-41 dispersed
Sed07g2409 Sed-Chr7:39930068 Sed08g2902 Sed-Chr8:40048530 1.60E-42 dispersed
Sed08g2902 Sed-Chr8:40048530 Sed09g1217 Sed-Chr9:36413865 8.90E-41 dispersed
Sed08g2902 Sed-Chr8:40048530 Sed08g2904 Sed-Chr8:40059012 8.10E-34 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39482 PF00808 CBFD_NFYB_HMF 3.20E-28 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2902 K08065 - csv:101204640 263.077