Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed08g2904 | ATGCATTTGGTTTCAGCGTTCAACATGTTGCTGACAACAAACAAACCATCCTCTGCAAACACTCCCAATAGCAACCATCACCAAAATGGTCGAAATGTCGCTGCAACTGGGGTTCCCTCGGGCGCGGACACAAACAATGAGCAGAGCGCCCAACAATGCGTGGTGCGGGAGCAAGACCAATACATGCCTATTGCCAATGTGATACGCATCATGCGACGGATCTTACCCTCCCATGCCAAGATATCCGACGATGCCAAGGAGACCATCCAAGAGTGTGTGTCCGAGTACATCAGCTTCATCACCGGTGAGGCTAACGAGCGATGCCAAAGGGAGCAGCGCAAGACTGTGACAGCTGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGCTTCGACGACTATGTTGAGCCTCTAACCATATTCCTCAATCGCTATCGCGAATCAGAGAGTGATCGAATTCGCACCGAGCCAATCATGAGGCGCAATGTGGATTACGGGCCACAAGTAGGGATGATTCCACCTTATGGTCAGGCATTTCAGATTGGGAATGTTCCACCGGGGATGTTCGATGCCATGGGCGGGTACTATGGTGGGTCAAGCTCAGGGAATGGCAGCCAGCTTTGA | 621 | 52.17 | MHLVSAFNMLLTTNKPSSANTPNSNHHQNGRNVAATGVPSGADTNNEQSAQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYVEPLTIFLNRYRESESDRIRTEPIMRRNVDYGPQVGMIPPYGQAFQIGNVPPGMFDAMGGYYGGSSSGNGSQL | 206 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 40059012 | 40059632 | - | Sed0020464.1 | Sed08g2904 | 724680 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed08g2904 | 206 | FunFam | Nuclear transcription factor Y subunit B-6 | 50 | 163 | - | - | |
Sed08g2904 | 206 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 43 | 151 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro) | |
Sed08g2904 | 206 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 62 | 125 | IPR003958 | - | |
Sed08g2904 | 206 | PRINTS | CCAAT-binding transcription factor subunit A signature | 89 | 107 | - | - | |
Sed08g2904 | 206 | PRINTS | CCAAT-binding transcription factor subunit A signature | 127 | 145 | - | - | |
Sed08g2904 | 206 | PRINTS | CCAAT-binding transcription factor subunit A signature | 108 | 126 | - | - | |
Sed08g2904 | 206 | MobiDBLite | consensus disorder prediction | 14 | 49 | - | - | |
Sed08g2904 | 206 | SUPERFAMILY | Histone-fold | 58 | 151 | IPR009072 | GO:0046982(InterPro) | |
Sed08g2904 | 206 | ProSitePatterns | NF-YB/HAP3 subunit signature. | 92 | 108 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Sed08g2904 | 206 | Gene3D | Histone, subunit A | 46 | 163 | IPR009072 | GO:0046982(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed08g2904 | Sed-Chr8:40059012 | Sed13g0981 | Sed-Chr13:7580450 | 1.10E-32 | dispersed | |
Sed08g2902 | Sed-Chr8:40048530 | Sed08g2904 | Sed-Chr8:40059012 | 8.10E-34 | proximal |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39483 | PF00808 | CBFD_NFYB_HMF | 2.30E-25 | CL0012 | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed08g2904 | K08065 | - | csv:116402762 | 308.916 |