Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2904 ATGCATTTGGTTTCAGCGTTCAACATGTTGCTGACAACAAACAAACCATCCTCTGCAAACACTCCCAATAGCAACCATCACCAAAATGGTCGAAATGTCGCTGCAACTGGGGTTCCCTCGGGCGCGGACACAAACAATGAGCAGAGCGCCCAACAATGCGTGGTGCGGGAGCAAGACCAATACATGCCTATTGCCAATGTGATACGCATCATGCGACGGATCTTACCCTCCCATGCCAAGATATCCGACGATGCCAAGGAGACCATCCAAGAGTGTGTGTCCGAGTACATCAGCTTCATCACCGGTGAGGCTAACGAGCGATGCCAAAGGGAGCAGCGCAAGACTGTGACAGCTGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGCTTCGACGACTATGTTGAGCCTCTAACCATATTCCTCAATCGCTATCGCGAATCAGAGAGTGATCGAATTCGCACCGAGCCAATCATGAGGCGCAATGTGGATTACGGGCCACAAGTAGGGATGATTCCACCTTATGGTCAGGCATTTCAGATTGGGAATGTTCCACCGGGGATGTTCGATGCCATGGGCGGGTACTATGGTGGGTCAAGCTCAGGGAATGGCAGCCAGCTTTGA 621 52.17 MHLVSAFNMLLTTNKPSSANTPNSNHHQNGRNVAATGVPSGADTNNEQSAQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYVEPLTIFLNRYRESESDRIRTEPIMRRNVDYGPQVGMIPPYGQAFQIGNVPPGMFDAMGGYYGGSSSGNGSQL 206
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40059012 40059632 - Sed0020464.1 Sed08g2904 724680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2904 206 FunFam Nuclear transcription factor Y subunit B-6 50 163 - -
Sed08g2904 206 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 43 151 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Sed08g2904 206 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 62 125 IPR003958 -
Sed08g2904 206 PRINTS CCAAT-binding transcription factor subunit A signature 89 107 - -
Sed08g2904 206 PRINTS CCAAT-binding transcription factor subunit A signature 127 145 - -
Sed08g2904 206 PRINTS CCAAT-binding transcription factor subunit A signature 108 126 - -
Sed08g2904 206 MobiDBLite consensus disorder prediction 14 49 - -
Sed08g2904 206 SUPERFAMILY Histone-fold 58 151 IPR009072 GO:0046982(InterPro)
Sed08g2904 206 ProSitePatterns NF-YB/HAP3 subunit signature. 92 108 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Sed08g2904 206 Gene3D Histone, subunit A 46 163 IPR009072 GO:0046982(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2904 Sed-Chr8:40059012 Sed13g0981 Sed-Chr13:7580450 1.10E-32 dispersed
Sed08g2902 Sed-Chr8:40048530 Sed08g2904 Sed-Chr8:40059012 8.10E-34 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39483 PF00808 CBFD_NFYB_HMF 2.30E-25 CL0012 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2904 K08065 - csv:116402762 308.916