Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2908 ATGCCTCCAATCAACCTCCTCGTTTTCGCCCTTTTCCTCATTCTCTTCCCCCCACCATTAACACACAGCATCGCCTTCCATTTCACCTCTTTCCACATCTCAAACCTCACTCTCCTCGGCGATTCCCACCTCCGCGCCGGCGCCATCCGCCTCACCAAACACCTCCCCGTCCCTTCCTCCAGCGCCGGCGCCGCCATTTACAACCAACCCATCCCATTTTACGACCCCCATTCCGCCACCGCCGCCTCTTTCTCCACGTCTTTCTCTTTCTCCATCGCCAACATCAACCCCACTCTTGCCGGCGACGGCCTTTCCTTTTTCCTCTCCGCCAATAACCACACTCTCGGCAGCTCCGGCGGCTATCTGGGTCTCGTTAATTCCTCCCAATTGACCGATAACAAGTTTGTGGCTGTTGAATTTGATACGCGCCTTGATTCTTTCTTCCATGATCCCAATTCTCATCATGTTGGTTTCGACATTCATACCTTGGTTTCGATCCAAACGGCTGACCCTGTTTCTCAAGGGGTCAATCTCAAGAGTGGTAAGTTGATTACTGCTTGGATTGAGTACAAGAATGAGGACTCTAGGTTTAGGGTTTTCTTGGGTTATTCTCATTTGAGGCCTCTCGAGGCTCTTCTCGACGTCCATGTCGATCTGTCCTCCTATCTTAAGGAGGTTATGTATGTCGGGTTTTCGGGTTCTACGGAAGGGAGTACTGAGCTTCATTTGATTGAAAGTTGGAGCTTTTCTATGGATGGTTTTGTTCTTGCTAGTAGGCCTACATTTAATCCTCATAAAGTTTCTGTTAGCTCTGTGATTTTTTCTCCTAATGTTTCTGTATCTGATTTTCTCAATGGACATGGTAGTAGGCTCGGGTTGGGACTCGGAATTGCTGGATCGGCCTTATTTTGTGTTGTGATTGTTTTGTTTGGTTTCCTTTTGCTTGGGAAATGGAGGGATATTAGAATTCAGAAGAGCTTCAAGGCTGAGCTTTTGACAAGTCCTAGAGAGTTTAGTTATAATGAACTTAAGACTGCCACAAAAGGATTTCACTACAGCAGGATCCTTGGCAGTGGAGCTTTTGGGACTGTTTATAAAGCTTTTTGTATCTCATCGGGAACTATTTCAGCAGTCAAGAGATCGAAGCATTCCAACGAAAGGATGACCGAGTTCCAGGCAGAGTTGTCGATTATAGCCCGGGTGAGGCACAAGAATTTGGTTCAGCTTCAAGGTTGGTGTGCAGACAAAGATGAACTGCTTCTTGTTTACGACTTTATGCCGAATGGGAGCCTCGATAGGCTCCTTTACCTGGAATCAGGAGAAGCTAGTTTGTTAAAGTGGTCTCATAGATACAACATTGCTGTTGGTTTGGCCTCTGTGCTTACATATCTACATCAGGAATGTGAGCAGCAGGTTATCCACAGAGATATAAAGACTGGTAATGTACTGTTGGATGAAAACTTCAATGCCAGATTAAGCGATTTTGGATTGGCGAAGCTCATGGATCACGGCAAGAGCCTGGATTCAACTCTGAGTGTAGGAACGATCGGATACCTTGCACCCGAGTATCTTCAATATGGGAAAGCGACTGAGAAAACCGACGTCTTCAGCTACGGTGTGGTTATCCTTGAAGTGGCCTGCGGGAGGAGGCCAATCAAAAGGGAAGCAGGTACTCGGAAGATGGTCAATCTGGTAGATTGGGTTTGGGGATTGCATTCTCAAGGCAAGATCATCAAAGCAGCCGATAAAAGGTTGAAATGGAAGTTCAGGGAAGAGGAAATGAGAAAGCTGTTACTTGTGGGATTGAGCTGTGCAAACCCGGATAGCTCGGCAAGGCCTTCGATGAGGAAGGTCCTACAGATTCTCAACAATGAGGCAGAGCCAGTGTTCATTCCGAAAATGAAGCCTAGTCTAACATTTTCATGTAGCTTTTCACTGACACTGGATGACATGACAGCAGAGGAAGGAGGAGGGCAGGAATCTTCAAAGACATCCATTGTCCAAATAGACTGA 2013 46.75 MPPINLLVFALFLILFPPPLTHSIAFHFTSFHISNLTLLGDSHLRAGAIRLTKHLPVPSSSAGAAIYNQPIPFYDPHSATAASFSTSFSFSIANINPTLAGDGLSFFLSANNHTLGSSGGYLGLVNSSQLTDNKFVAVEFDTRLDSFFHDPNSHHVGFDIHTLVSIQTADPVSQGVNLKSGKLITAWIEYKNEDSRFRVFLGYSHLRPLEALLDVHVDLSSYLKEVMYVGFSGSTEGSTELHLIESWSFSMDGFVLASRPTFNPHKVSVSSVIFSPNVSVSDFLNGHGSRLGLGLGIAGSALFCVVIVLFGFLLLGKWRDIRIQKSFKAELLTSPREFSYNELKTATKGFHYSRILGSGAFGTVYKAFCISSGTISAVKRSKHSNERMTEFQAELSIIARVRHKNLVQLQGWCADKDELLLVYDFMPNGSLDRLLYLESGEASLLKWSHRYNIAVGLASVLTYLHQECEQQVIHRDIKTGNVLLDENFNARLSDFGLAKLMDHGKSLDSTLSVGTIGYLAPEYLQYGKATEKTDVFSYGVVILEVACGRRPIKREAGTRKMVNLVDWVWGLHSQGKIIKAADKRLKWKFREEEMRKLLLVGLSCANPDSSARPSMRKVLQILNNEAEPVFIPKMKPSLTFSCSFSLTLDDMTAEEGGGQESSKTSIVQID 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40067737 40072454 + Sed0022768.3 Sed08g2908 724684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2908 670 Pfam Legume lectin domain 24 253 IPR001220 GO:0030246(InterPro)
Sed08g2908 670 SMART serkin_6 350 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2908 670 SUPERFAMILY Concanavalin A-like lectins/glucanases 23 256 IPR013320 -
Sed08g2908 670 Gene3D Phosphorylase Kinase; domain 1 320 425 - -
Sed08g2908 670 CDD STKc_IRAK 356 624 - -
Sed08g2908 670 SUPERFAMILY Protein kinase-like (PK-like) 333 645 IPR011009 -
Sed08g2908 670 Gene3D - 21 258 - -
Sed08g2908 670 CDD lectin_legume_LecRK_Arcelin_ConA 26 253 IPR001220 GO:0030246(InterPro)
Sed08g2908 670 ProSitePatterns Protein kinases ATP-binding region signature. 356 379 IPR017441 GO:0005524(InterPro)
Sed08g2908 670 ProSitePatterns Serine/Threonine protein kinases active-site signature. 472 484 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed08g2908 670 Gene3D Transferase(Phosphotransferase) domain 1 426 641 - -
Sed08g2908 670 ProSiteProfiles Protein kinase domain profile. 350 630 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2908 670 FunFam L-type lectin-domain containing receptor kinase VIII.1 22 262 - -
Sed08g2908 670 PANTHER - 36 632 IPR050528 GO:0002229(PANTHER)|GO:0005886(PANTHER)|GO:0042742(PANTHER)
Sed08g2908 670 ProSitePatterns Legume lectins beta-chain signature. 136 142 IPR019825 -
Sed08g2908 670 FunFam L-type lectin-domain containing receptor kinase VIII.1 426 640 - -
Sed08g2908 670 Pfam Protein kinase domain 351 620 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2906 Sed-Chr8:40067737 Sed08g2908 Sed-Chr8:40067737 0.00E+00 dispersed
Sed08g2908 Sed-Chr8:40067737 Sed13g1063 Sed-Chr13:9175758 9.70E-112 dispersed
Sed08g2907 Sed-Chr8:40067737 Sed08g2908 Sed-Chr8:40067737 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79734 PF00069 Pkinase 4.20E-53 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2908 - - - 0.0