Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2915 ATGGGCGTCGATAACAGTTTACGACTCGATAATTTTCGCAACAACTTTAAAATTGAAGTGATTGATCTCAAGGAGGATGACATTGAGTTTGACATGATCGGCATTGATCCCTCACTTGCCAATGCATTTCGAAGAATCCTGATAGCTGAGGTTCCCACTATGGCTATTGAAAAAGTTCTTGTTGCTAACAATACATCAATAATCCAAGATGAAGTGCTTGCCCATAGGTTAGGTCTCATTCCGATTCAAGTTGATCCAAGACTTTTTGAGTATTCAGATAAAGACACGCCAAATGAGAAGAATACCATTGTTTTTAGACTTCATGCTCGTTGTGAACCTATGGAATCTCGTCGTACAGTGAAAACAAAAGAATTGACGTGGCTACCAAATGGTAGTGAATTTCCCTTGGTATCTGACAAATCAGTTTCAAACACAAAACCCAAAACGTATACTTCTTTCAGTTGCAGCCAAGACACACTGCCAGAATTTTCCAACAATCCCATTGGTCCGAAGGAGAATGATATTATAATTGCTAGACTCGCTCCGGGTCAGGAAATTGAACTTGAAGCTCATGCTGTTAAAGGTATGGGTAAAACACACGCTAAGTGGTCTCCAGTGGCCACTGCTTGGTACAGAATGCTTCCTGAGGTTGTACTTCTCGAAGAGATAAAAGATGAGTTGGCTGAAGAACTCCAAAACAAGTGTCCTGTCAATGTTTTTGACATTGAAGACGTAGCTAATGGCAAGAAAAGGGCAACTGTAGCACGCCCAAGAGCTTGCACATTGTGTAGAGAATGCATAAGAGAAGAAGCATGGGAGAAACGTGTTGCATTGCGTCGCGTGAAGGATCATTTCATTTTTAAGATTGAATCAACAGGAGCTCTACCTCCTGAGGTTCTCTTCACTGAAGCTGTAAAGATTTTGGAAGATAAGTGTGAACGTTTAATTTCTGATCTCTCTTGA 963 40.81 MGVDNSLRLDNFRNNFKIEVIDLKEDDIEFDMIGIDPSLANAFRRILIAEVPTMAIEKVLVANNTSIIQDEVLAHRLGLIPIQVDPRLFEYSDKDTPNEKNTIVFRLHARCEPMESRRTVKTKELTWLPNGSEFPLVSDKSVSNTKPKTYTSFSCSQDTLPEFSNNPIGPKENDIIIARLAPGQEIELEAHAVKGMGKTHAKWSPVATAWYRMLPEVVLLEEIKDELAEELQNKCPVNVFDIEDVANGKKRATVARPRACTLCRECIREEAWEKRVALRRVKDHFIFKIESTGALPPEVLFTEAVKILEDKCERLISDLS 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40091045 40097549 - Sed0017208.2 Sed08g2915 724691

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2915 320 Gene3D - 18 311 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Sed08g2915 320 SUPERFAMILY RBP11-like subunits of RNA polymerase 14 318 IPR036603 GO:0006351(InterPro)|GO:0046983(InterPro)
Sed08g2915 320 PANTHER DNA-DIRECTED RNA POLYMERASE 4 320 IPR050518 GO:0001054(PANTHER)|GO:0001056(PANTHER)|GO:0003899(PANTHER)|GO:0005666(PANTHER)|GO:0005736(PANTHER)
Sed08g2915 320 Gene3D - 53 201 IPR036643 -
Sed08g2915 320 SMART rpoldneu2 27 318 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Sed08g2915 320 Pfam RNA polymerase Rpb3/Rpb11 dimerisation domain 29 312 IPR011263 GO:0003899(InterPro)|GO:0006351(InterPro)
Sed08g2915 320 SUPERFAMILY Insert subdomain of RNA polymerase alpha subunit 52 205 IPR036643 -
Sed08g2915 320 Pfam RNA polymerase Rpb3/RpoA insert domain 70 202 IPR011262 GO:0003899(InterPro)|GO:0006351(InterPro)|GO:0046983(InterPro)
Sed08g2915 320 Hamap DNA-directed RNA polymerase subunit Rpo3 [rpo3]. 17 319 IPR022842 GO:0003899(InterPro)|GO:0006351(InterPro)
Sed08g2915 320 ProSitePatterns RNA polymerases D / 30 to 40 Kd subunits signature. 41 81 IPR001514 GO:0003677(InterPro)|GO:0003899(InterPro)|GO:0006351(InterPro)
Sed08g2915 320 CDD RNAP_I_II_AC40 16 317 IPR033901 GO:0001054(InterPro)|GO:0001056(InterPro)
Sed08g2915 320 FunFam RNA polymerase I subunit 43 53 201 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2915 K03027 - - csv:101203505 567.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2915 Sed-Chr8:40091045 Sed10g2004 Sed-Chr10:36637003 6.20E-32 dispersed
Sed08g2914 Sed-Chr8:40091045 Sed08g2915 Sed-Chr8:40091045 3.50E-183 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g692 . . . . . . Bma10g00596 . . Cmo06g00676 . . . . . . . . . . . . . . . . . . . . . . . . . . Csa03g00415 . . . . . . . . . . Sed08g2915 . . . . . . . . Bhi11g00465 Tan01g1832 Cmetu06g2791 . . . . . . . . . . . Lsi05g00502 . Chy06g01897 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006783 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 3 1 36