Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2938 ATGAAGTTGCTTGAATTCACTCAGATTACTATGTTTGGTTTTGAAATTTCAACTTTGGCCTTGCTTCGTTCTTTGTATATACAATGCTGGGAATTCACTTACATGGTTATGTTTGATTGTAGCGTTGAAATGCATATGGAATTTTCTGAGTACACGAGGATTGTACACAATCGAATCAGTAAGATAGATCCCGAAAATGTGACGAAGATCATTGGTTTCTTACTTCTCTGTAGTCAGGGTGATGGTGAACAAGAAATGGTTCGGTTGGCATTAGGGCCTGATCAGTATATTACCGAAATCGTTCACCTAGCCAAGGTCGAGCTGCAACTATTAGCTCTCAGAGCGATGTCGACCCCAGTGTCACCCCCGTCTCTTGGGGGCTTTGTTCCGTTCGCCTCTCCTCGAAACAGGCACCTCACATCTCCCCACGTAACTTACCAACAGCTGACTAACAAACCTGCTCCTGATTACATGCCATTAGGTTACACTGATTCTATGTATGAACTCCAAAATCCAGGTCAGCACTTGGATGACCTTATCGAACCACCCAACTCCAGCCTCACTGGCTACGACTATAGCTATGTTGACAATGCTGCAATGGTTAACAAATTGAGAACCAGGATTGCGGCCCGACACTACTCGGCAGGGACCGAGTTTCATCCTAAGATATGTCACTACTACAACAAAGGATTTTGCAAGCATGGAAGTAATTGTAGGTATCTTCATACAAACCTCATATCTGAGAGCTTTTCTCAGATATATATCAGCAATTCTGTCAATGATGATCATGTTTTTCGGACGGGTTCTCTTGAGAAGTTGGAGTTTGAAATCGTTGAGCTTCTTAAGTCAAGAAGAGGCAGTCCTATTTCGATTGCTTCACTGCCAATGATTTACTATGAAAAGTATGGAAAAGTTCTTCAAGCAGAAGGTTACCTGACTGAGAGCCAGAGGCATGGTAAATCAGGCTTTAGCTTGACGAAGCTTCTCATTCGATTGAAAAGGATTCAGGTGATCGACAGGCCGCACGGGCAGCATGCAGTTATTTTGGCAGAAGATGCTCCGAAATTCATAGAACATCGTAATGAGAAGAACGAACTTGGTCCGATCGTTAGCAGTGCAAGGCAGATATATATGACATTTCCCGCTGATAGCACCTTCACTGAAGATGATGTTTCTGTTTACTTCAGTGACCACTATGGACTGGTTGAAGATGTAAGGATCCCTTGCCAACAAAGAAGGATGTTTGGGTTCGTGACGTTTTCCAGTATCGAAACTGTGAATCTAATCTTGTCACATAACAACGAGCATTTAATTTGCGGGGCTCGGGTTCTGGTGAAACCTTATAGGGAAAAGTCGAAGCTAGAAAGGAGGAACCAAGAAAGAATTGAACAGCAACATCAAACTTATTATACTTCACAATACAACAACCTTGAATCTGAGCAGCTTCACTCAAGTAAGTAG 1461 42.64 MKLLEFTQITMFGFEISTLALLRSLYIQCWEFTYMVMFDCSVEMHMEFSEYTRIVHNRISKIDPENVTKIIGFLLLCSQGDGEQEMVRLALGPDQYITEIVHLAKVELQLLALRAMSTPVSPPSLGGFVPFASPRNRHLTSPHVTYQQLTNKPAPDYMPLGYTDSMYELQNPGQHLDDLIEPPNSSLTGYDYSYVDNAAMVNKLRTRIAARHYSAGTEFHPKICHYYNKGFCKHGSNCRYLHTNLISESFSQIYISNSVNDDHVFRTGSLEKLEFEIVELLKSRRGSPISIASLPMIYYEKYGKVLQAEGYLTESQRHGKSGFSLTKLLIRLKRIQVIDRPHGQHAVILAEDAPKFIEHRNEKNELGPIVSSARQIYMTFPADSTFTEDDVSVYFSDHYGLVEDVRIPCQQRRMFGFVTFSSIETVNLILSHNNEHLICGARVLVKPYREKSKLERRNQERIEQQHQTYYTSQYNNLESEQLHSSK 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40141298 40144709 + Sed0025163.6 Sed08g2938 724714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2938 486 ProSiteProfiles Zinc finger C3H1-type profile. 218 245 IPR000571 GO:0046872(InterPro)
Sed08g2938 486 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 374 450 IPR000504 GO:0003723(InterPro)
Sed08g2938 486 SUPERFAMILY RNA-binding domain, RBD 385 477 IPR035979 GO:0003676(InterPro)
Sed08g2938 486 Gene3D - 381 479 IPR012677 -
Sed08g2938 486 SMART rrm1_1 375 446 IPR000504 GO:0003723(InterPro)
Sed08g2938 486 SUPERFAMILY CCCH zinc finger 220 243 IPR036855 GO:0046872(InterPro)
Sed08g2938 486 Gene3D - 215 285 - -
Sed08g2938 486 Pfam RNA recognition motif 385 440 IPR000504 GO:0003723(InterPro)
Sed08g2938 486 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 223 242 IPR000571 GO:0046872(InterPro)
Sed08g2938 486 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) 46 478 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2938 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2931 Sed-Chr8:40141124 Sed08g2938 Sed-Chr8:40141298 2.30E-258 dispersed
Sed08g2932 Sed-Chr8:40141124 Sed08g2938 Sed-Chr8:40141298 2.30E-258 dispersed
Sed08g2936 Sed-Chr8:40141298 Sed08g2938 Sed-Chr8:40141298 1.30E-162 dispersed
Sed08g2938 Sed-Chr8:40141298 Sed12g1556 Sed-Chr12:25244417 1.50E-40 dispersed
Sed08g2937 Sed-Chr8:40141298 Sed08g2938 Sed-Chr8:40141298 1.60E-281 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g619 . . . . Bpe09g00132 . . Bma13g01110 Cmo16g00984 . . . . . . . . . . . . . . . Cla10g00430 Cam10g0428 Cec10g0450 Cco10g0440 Clacu10g0435 Cmu10g1266 Cre10g0683 . . Cone14ag1209 Cone15ag1226 . Csa03g00438 . Cme06g02784 . . . Bda12g00954 . . . . Sed08g2938 . . . Cma16g00946 . Car16g00909 Cpe14g00769 . Bhi11g00494 Tan01g1811 . . . . . . . . . . . . Lsi05g00520 . Chy06g01879 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002118 2 2 1 2 1 1 3 1 1 1 1 1 3 1 1 3 1 4 3 1 1 2 2 2 2 2 1 11 6 2 65