Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2939 ATGCAAGAACCTTCAAGAAAGAATGTCCCAAATCAATCTCATAGGTTCTATGAACAGCCACATAAAGAACCTGGATCCTATTGCTGGCCTCCTACAGACCAAAAAGGCTTGTATTCTGACGATGCATTTCAACAAAATCACTTGCCATCCGAGCCTTTCAAACAGTATTGCAACCTTGAGTCATCCTCGGTAACTAGTAGTTACCCTCCTCAAAATTCTTCCTCTACTGTTAGCTTTGCATCAAATGGAAGCCCTGCTTCACACCAAGAGTGTCATTCATACCCAATAAACCCGTATTATTCTCCCGACAACAACTGTGGCTCACCTGTCAGTAGATCTTGCTCAACAGATGCTGCAGTGGATGACTTAAAGTACAAGCTCAGGGAATTGGAAACTGCAATGCTTGGACCTGATGCAGATATGCTTGACATCTATTCTGTCACTCATCCAGTCAATCCTGTATTACCTGTGCCAAAAGCAGAGTGGAAAGATGTGGCTGAGATAATCTCTAGGAAGGATTTGAAAGAGGTGCTTTGCGCTTGTGCTCGAGCAATAGGAGAAAATGATATGTTGACTGGGGAATGGTTGATGTCAGAGTTACGTGGAATGGTCTCGGTTTCTGGTGAGCCGATCCAGCGTTTAGGAGCTTACTTGTTAGAGGCACTTGTTGCAAGGACAGCCTCTTCAGGTAGTGCTATTACCAACGCCCTAAGATGTAAAGAGCCCATAGGTTCTGAAATGCTATCATACATGCACATTCTCTATGAAGTTTGCCCTTATTTCAAGTTCGGGTACCTGTCAGCTAATGGTGCAATAGCTGAAGCCATAAAAGGTGAAAGTAGAGTTCACATAATTGATTTTCAGATAACACAGGGAAATCAGTGGATCTCGTTGATGCAAGCTCTTGCCAATCGGCCAGGAGGGCCCCCAAAGATCACTATTACAGGCATAGACGATTCGGCATCAGCATATGCTCGAGGAGGGGGGCTCGAAATTGTAGCGAAAAGGTTGTCAATTTTGGCAGAATCATTAATGGTGCCATTTGAGTTCCATGGAATTGCAGGCTCTGCTTCTGAAATTCATCGCGAAGATCTAAAGGTTCAACTAGGTGAGGCCATTGTCGCCAATTTTGCCATGGTACTGCATCATATGCCAGATGAAAGTGTTGGCAGTCAGAATCACAGGGATCGAATTTTGCGGCTAGTCAAGAGCTTGTCTCCAAAAGTTGTGACTGTTGTCGAGCACGAGTCAAACAACAATACAGCTCCCTTTTTATCCCGTTTCCTCCAGACATTGAAATACTATACTGCTATTTTCGAATCCATAGATGTGACTCTTCCAAGAGAGCACAAGAAGAGGATCAATGTCGAGCAGCACTGTTTAGCTCGGGACATTGTGAATATCATAGCATGTGAGGGAGCCGAAAGAGTTGAACGCCATGAACTTCTGGGAAAGTGGAGATCACGGTTCCTCATGGCTGGGTTTAAGCCACACCCTTTAAGCCATTTTGTGAATGCTACCATTGAGACACTGCTAAAGAACTACTGTGACAAGTACACGCTTGAGGAAAGGGATGGAGCTCTATATCTCGGCTGGGTGAATCAAAATTTAGTTACCTGTAGTGCTTGGATATGA 1635 44.34 MQEPSRKNVPNQSHRFYEQPHKEPGSYCWPPTDQKGLYSDDAFQQNHLPSEPFKQYCNLESSSVTSSYPPQNSSSTVSFASNGSPASHQECHSYPINPYYSPDNNCGSPVSRSCSTDAAVDDLKYKLRELETAMLGPDADMLDIYSVTHPVNPVLPVPKAEWKDVAEIISRKDLKEVLCACARAIGENDMLTGEWLMSELRGMVSVSGEPIQRLGAYLLEALVARTASSGSAITNALRCKEPIGSEMLSYMHILYEVCPYFKFGYLSANGAIAEAIKGESRVHIIDFQITQGNQWISLMQALANRPGGPPKITITGIDDSASAYARGGGLEIVAKRLSILAESLMVPFEFHGIAGSASEIHREDLKVQLGEAIVANFAMVLHHMPDESVGSQNHRDRILRLVKSLSPKVVTVVEHESNNNTAPFLSRFLQTLKYYTAIFESIDVTLPREHKKRINVEQHCLARDIVNIIACEGAERVERHELLGKWRSRFLMAGFKPHPLSHFVNATIETLLKNYCDKYTLEERDGALYLGWVNQNLVTCSAWI 544
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40146524 40150204 + Sed0007021.1 Sed08g2939 724715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2939 544 ProSiteProfiles GRAS family profile. 165 544 IPR005202 -
Sed08g2939 544 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 143 543 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Sed08g2939 544 MobiDBLite consensus disorder prediction 1 15 - -
Sed08g2939 544 MobiDBLite consensus disorder prediction 1 33 - -
Sed08g2939 544 Pfam GRAS domain family 174 543 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0961 Sed-Chr5:7904776 Sed08g2939 Sed-Chr8:40146524 4.70E-173 dispersed
Sed05g0962 Sed-Chr5:7904776 Sed08g2939 Sed-Chr8:40146524 4.70E-173 dispersed
Sed07g2646 Sed-Chr7:41913935 Sed08g2939 Sed-Chr8:40146524 7.20E-135 dispersed
Sed07g2857 Sed-Chr7:43319462 Sed08g2939 Sed-Chr8:40146524 3.00E-106 dispersed
Sed07g2858 Sed-Chr7:43319462 Sed08g2939 Sed-Chr8:40146524 3.00E-106 dispersed
Sed08g2939 Sed-Chr8:40146524 Sed14g1298 Sed-Chr14:21901574 5.40E-137 dispersed
Sed08g2939 Sed-Chr8:40146524 Sed01g0551 Sed-Chr1:4124622 1.10E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39484 PF03514 GRAS 2.50E-126 CL0063 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2939 K27748 - csv:101220072 927.161