Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2940 ATGATGCCTAGTGTGATGACAGACTCGACAGAGAAGGAGTCGGAGGCATTTGAAGAAGTGCACCCGACGGGTCGATACGGGCGGTACAGGGAGCTGCTGGGGGCGGGGGCGGTGAAGAAAGTGTACAGGGGATTCGACCAGGAAGAAGGAATTGAGGTGGCTTGGAACCAGGTGAAACTGAGGAGCTTTTCCAACGATCCATATATGATCGATAGGCTGTACTCGGAGGTGACATTGCTGAGAGCCTTGAAGAACAAGAACATCATTGCGCTGTACGACGTGTGGCTGGACAAAGCTCATGGGACCTTGAACTTCATAACTGAGGTTTGTACGAGTGGGAATCTGAGGCAGTACAGGAAGAAACACAGGCAAGTTTCGTTGAAGGCTCTGAAGAAATGGTCGAAGCAGATTCTGGAGGGGCTGCACTATTTGCATACTCGCGACCCTTGTGTTATTCATAGAGATCTCAACTGCAGCAACCTGTTTGTGAATGGCAATGTTGGACAGGTGAAGATCGGTGACTTGGGATTGGCAGCGACAGTGGAAAAGAACCACTCGGCTCACTCGGTGCTTGGGACACCCGAATTCATGGCACCTGAGCTATACGAGGAGCACTACACAGAGCTTGTGGACATATACTCCTTCGGAATGTGTTTGCTTGAATTGGTCACTTTGGAAATTCCCTATAGTGAGTGTCACAATGTTGCTCAAATCTATAAGAAAGTCTCCTCCGGGGTCAAGCCTATGGCCCTGCACAAGCTCCAGGACCCTCAGGTCAGGGCTTTCATTGACAAGTGCCTCGCAAACTCCCAAGCTCGCCCCTCCGCTGCCCACCTCCTCCTCGACCCCTTTTTCACCGAAATCAATGACGACCACCACAGTGATCATTAA 891 50.95 MMPSVMTDSTEKESEAFEEVHPTGRYGRYRELLGAGAVKKVYRGFDQEEGIEVAWNQVKLRSFSNDPYMIDRLYSEVTLLRALKNKNIIALYDVWLDKAHGTLNFITEVCTSGNLRQYRKKHRQVSLKALKKWSKQILEGLHYLHTRDPCVIHRDLNCSNLFVNGNVGQVKIGDLGLAATVEKNHSAHSVLGTPEFMAPELYEEHYTELVDIYSFGMCLLELVTLEIPYSECHNVAQIYKKVSSGVKPMALHKLQDPQVRAFIDKCLANSQARPSAAHLLLDPFFTEINDDHHSDH 296
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40156396 40158255 + Sed0019251.1 Sed08g2940 724716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2940 296 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 11 288 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Sed08g2940 296 Gene3D Phosphorylase Kinase; domain 1 9 108 - -
Sed08g2940 296 CDD STKc_WNK 25 285 - -
Sed08g2940 296 ProSiteProfiles Protein kinase domain profile. 27 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2940 296 SUPERFAMILY Protein kinase-like (PK-like) 29 292 IPR011009 -
Sed08g2940 296 Pfam Protein kinase domain 31 285 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed08g2940 296 MobiDBLite consensus disorder prediction 1 20 - -
Sed08g2940 296 Gene3D Transferase(Phosphotransferase) domain 1 110 291 - -
Sed08g2940 296 FunFam Probable serine/threonine-protein kinase WNK1 11 108 - -
Sed08g2940 296 FunFam probable serine/threonine-protein kinase WNK9 110 291 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0960 Sed-Chr5:7896020 Sed08g2940 Sed-Chr8:40156396 1.00E-121 dispersed
Sed08g2940 Sed-Chr8:40156396 Sed11g0251 Sed-Chr11:2244660 2.30E-97 dispersed
Sed08g2940 Sed-Chr8:40156396 Sed01g0550 Sed-Chr1:4117786 1.10E-120 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79735 PF00069 Pkinase 1.60E-49 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2940 K08867 - csv:101221172 518.85