Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2972 ATGGAGGAAACCGCCGCCGACAAGAGGCCAATTGAGATTCACGGCGACGCTGACGCTGACGACGCGGACCTCCACTTGATCAAGAAGCCCCGGGTTGCTCCTAATCTCAGAAGGGTCGCCGAGATTGTGCTCGCCATCTCCACCATGACCGCCCTGCGTGCTGGCAACCACCCCACCCATGCCGAGCTTCAATTAATGGCTGAGGCTAGGGCTAAGCTCCTTCCCATCTGCCAACAATTCCCGCCCAACCTGTTTGTCGGAACCGAAGCTATTACCTCTCTCATTCACGATTTGGGCCTTCATCCCAAGCCTACGGATCACAACTTAGGGTTTCGGGGTCCCAGGCTGACCATAGCCGACAAGTTCGCCCACGCTAAGAAGAAGATGGAAGATTCCAAGAAATATATGCCACCGTCAGGTTATGGATCTCAACCAATCCAAACAAGCTTCACTTCATCAATTGAGACCCGTGGGACATTGCCTACTGTTCGGATGTTTTCCTCAGATAAATCAAGTAATGTTCCGACTTCTGTGGGTGGCACAGTAGCTGCTCTGCCTTCAGGTCATGTTTCTGTCTCTGGTTCTACATCTATACAGGTTCAAGCGCAACTACCAAGCAATGAAGCCAGAGCACATATTATTTCAAGTGGATTTCCTATTAGTCATCAAGGAAGGGATTCTTCCTCACTCTTGCATGGCATTGAAAGACCACTAAATGGGACATATGGATCTCAAGTACAAGTTAATTCTTCAGCAAATCACCCTCTGGCAAATGTTCCAACTTGGTCTGCTCAAACTCAATCCGCCTTGTCAGCTAAAGGTGTGCCAGAGCACAAACTGCCCAGTCATTCAGGTGTTAATGCCCAGGGAATCACAGATTCCAGAACCTTGAGATCGTCTTCTCAAGGAGCCAGGGACCAGAATTTTAGACCTTCAATTTCCCAAACTGTGACAGGAAATATAGCTGGTTTGCAGCCACATTTACAGAGTATGAGCTATGTGCAAGGACCTTCACTTTCTAATAATCACAATGATATTGTCAAAATTATTCAGAAGCTGTTACAGCCACAGCCTCCAGATCATCCTACATGGAATCCTCCTTCTAGAGATTATATGAACAAGGCCGTGACTTGCCAAACTTGTCAAGTTACCATTAATGAGATTGATAGTGTACTTATATGTGATGCTTGTGAGAAAGGATTTCACCTGAAATGTGTACAGTCACCTAATCAGAGAGCAATTCCTAGAGGTGAATGGCACTGCCCAAGATGTTTAACTATAAGCAATGGGAAGCCTTTACCTCCTAAATATGGGCGTGTCATGAGGAGTAATCCCCCACCAAAGTTATCTGTCAATACCAGCGGAACAGCATGGGAGAAAAGATCAGGAGCCATAGAACAAAACACCAGTGCTGGTCAGCTGAAGTTAGTTCCTAATGGAGGTTCTGATTTGCAAAGTGCTCAGCCTGCTGACCATGGAAGCAATGCCAATGAATCTGGTATTAGAATTGTGGAAGAAATTCATGGAAATCATTTTCTGCCAATTAGAAAAGACATGGACGAGAAACCAACCTCTTCAACTTCCCTGAATACCCCAGCCAAATCCGTGGAACTGGTTTGTGACCCCTCTTCTACTGAGTTATCAAGTGAAAGATGTACTCAGCAGACTAAAAGTTCTCAAGCATCAATAGGTGAAGATGGATCTTCATTGAAATCAGAGCCTCCACAAGAATCCCAAACAATGGCTGACAATTATTCTCAAATTGTTGATCAGAAAATGGTTTCTAATGGTTCAGAAAAACCTTACTCAACAGAAAATACTAATCACATTTCAAGTGTCAAGAAAGACGGCCCTGAATTTCTGCAGGAAAATATTGTTGAAAATTTTGAAGCTGGCATCATAAGTAGAGAGCAGTCCGGGACTAAATCCGATGGCTTGCATGATGTTGAATGGGTGGGAAGCCCACATCAGATTGAAGATGGGAAGGCATACTACAGATCCTGTTGCATTGATGGTGTTACATATAAAGTTGAAGAATTTGCTCTTTTTCATACCAGTAACGGGAAATTGATGCCATATATGCTTCAGTCCATGTGCAGTGAGTTTGAAAGTGGGTCGAACTTGGCTATTCTTAAGAGGTGTTACTTTTATGAAGACTTGCCAAAGGAAGTTGCCCACCTCTGTCCATGCTCCCCTGAACAAAATGAGGTATATACATCCGATGGATATATTGATTTACAAGTAGGTTTAATTCGAGGACCATGTGAAATTCTTCCTGTTTCCAAGTATAAAGAAGAATATGAAAGACGAAGGCAATTGGGTGTTGGGGCAGATAATGAAATAAAGCGAATTTTCCTGTGCAAGTATGTCCATTTTCTTAAATTCTTTTACCACCTGGTGCTTTTAGAGACGGTATCGAGCAGTTTTCCTTTATTGAACAATGTGTTGATCAATTATTTTTTAGACTGA 2469 43.58 MEETAADKRPIEIHGDADADDADLHLIKKPRVAPNLRRVAEIVLAISTMTALRAGNHPTHAELQLMAEARAKLLPICQQFPPNLFVGTEAITSLIHDLGLHPKPTDHNLGFRGPRLTIADKFAHAKKKMEDSKKYMPPSGYGSQPIQTSFTSSIETRGTLPTVRMFSSDKSSNVPTSVGGTVAALPSGHVSVSGSTSIQVQAQLPSNEARAHIISSGFPISHQGRDSSSLLHGIERPLNGTYGSQVQVNSSANHPLANVPTWSAQTQSALSAKGVPEHKLPSHSGVNAQGITDSRTLRSSSQGARDQNFRPSISQTVTGNIAGLQPHLQSMSYVQGPSLSNNHNDIVKIIQKLLQPQPPDHPTWNPPSRDYMNKAVTCQTCQVTINEIDSVLICDACEKGFHLKCVQSPNQRAIPRGEWHCPRCLTISNGKPLPPKYGRVMRSNPPPKLSVNTSGTAWEKRSGAIEQNTSAGQLKLVPNGGSDLQSAQPADHGSNANESGIRIVEEIHGNHFLPIRKDMDEKPTSSTSLNTPAKSVELVCDPSSTELSSERCTQQTKSSQASIGEDGSSLKSEPPQESQTMADNYSQIVDQKMVSNGSEKPYSTENTNHISSVKKDGPEFLQENIVENFEAGIISREQSGTKSDGLHDVEWVGSPHQIEDGKAYYRSCCIDGVTYKVEEFALFHTSNGKLMPYMLQSMCSEFESGSNLAILKRCYFYEDLPKEVAHLCPCSPEQNEVYTSDGYIDLQVGLIRGPCEILPVSKYKEEYERRRQLGVGADNEIKRIFLCKYVHFLKFFYHLVLLETVSSSFPLLNNVLINYFLD 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40301826 40320934 - Sed0002209.3 Sed08g2972 724748

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2972 822 ProSiteProfiles BAH domain profile. 673 802 IPR001025 GO:0003682(InterPro)
Sed08g2972 822 SMART PHD_3 377 425 IPR001965 -
Sed08g2972 822 Pfam PHD-finger 378 424 IPR019787 -
Sed08g2972 822 ProSitePatterns Zinc finger PHD-type signature. 378 424 IPR019786 -
Sed08g2972 822 MobiDBLite consensus disorder prediction 474 495 - -
Sed08g2972 822 ProSiteProfiles Zinc finger PHD-type profile. 375 427 IPR019787 -
Sed08g2972 822 MobiDBLite consensus disorder prediction 285 312 - -
Sed08g2972 822 MobiDBLite consensus disorder prediction 275 312 - -
Sed08g2972 822 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 5 789 - -
Sed08g2972 822 MobiDBLite consensus disorder prediction 524 580 - -
Sed08g2972 822 SUPERFAMILY FYVE/PHD zinc finger 368 434 IPR011011 -
Sed08g2972 822 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 366 439 IPR013083 -
Sed08g2972 822 MobiDBLite consensus disorder prediction 474 496 - -
Sed08g2972 822 Gene3D - 642 798 IPR043151 -
Sed08g2972 822 MobiDBLite consensus disorder prediction 514 580 - -
Sed08g2972 822 MobiDBLite consensus disorder prediction 435 457 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2972 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2970 Sed-Chr8:40301826 Sed08g2972 Sed-Chr8:40301826 0.00E+00 dispersed
Sed08g2971 Sed-Chr8:40301826 Sed08g2972 Sed-Chr8:40301826 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g580 . . . . . . . . Cmo16g00950 . . . . . . . . . . . . . . . Cla10g00470 Cam10g0457 Cec10g0479 Cco10g0466 Clacu10g0477 Cmu10g1306 Cre10g0711 . . Cone14ag1182 Cone15ag1199 . Csa03g00472 . Cme06g02834 . Blo10g00851 . Bda12g00937 . . . . Sed08g2972 . . . . . . . . Bhi11g00572 Tan01g1753 Cmetu06g0787 . Hepe06g0022 Mch10g1340 . . . . . . . . Lsi05g00560 . Chy06g01850 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008595 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 3 2 2 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39487 PF00628 PHD 2.80E-08 CL0390 Sed TR