Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed08g2980 ATGGAGGTGTTGGGGTGTAGTAAGGTTTTTGTTTGGTCTCCTCCTTGTTTGGTTGAATGGAGGAATGGAGGAGCGTGGTCCAAGTCCGTGAAGCTCCAACCACTTCACCTCATTCGCCCTCTCCAAACGCGTGCCCCCACTTCCTGCCGATTTGCTACTACTTCTTCGCCTTCTCCCCCCGATGATGTTGCCCCCAAGATCGACAAACTTCCCGAGGACCTCGACATTTCCGAGACCCAAGAGCCCAATTCCACCGTTAGATTGAGCGTAGGAGTTCCACCCGCTGTTTGCCAGGATTGTCATACCAGGACCATAGCTGAGTTCATGAAACAGGCCAAGATCCCAGGATTTCGTCCTGGAAAGCAAGTTCCGGAGACTATTCTTCTAAGTTATGTAGGGAAGAGCAACGTGCAGAAGGCCGTTGTAGAATCAATTTTGAAGAGGACTCTTCCTCATGCCATGTCCTCCGTACAAGGAAGGGCACTCAAAGACTCAGTTCGTATCGCCTCTAAATTTTCTGACTTGGAGCATACCTTATTTTCTCAAGGCTCTCTCAGATATGACATTATTGTTGATGTTGCACCTGAAATTAGATGGGTTCCTGAGAATGGATACAGAAACTTGAAGGTGCTTGTTGAAATAGACAATAATGAAATAGATGCTCAAAAAGCTTCTCAACAAGAATTAAAGCGCCGCCACAAGTCCCTCGGTATACTAAGGATTGTGACTGATAGAGGATTACAGATTGGTGATGTTGCAGTAATTAATATATCGGCAACAACAATTGGTCAAGACCAATCCAGTGGTCAAAAGATTCCATCGGCAGAGTCTAAAGGTTATAATTTTGATACGGAAGACGGTGATAAAGTCCTTCCTGGGTTTCTTGATTCATTAACTGGTATTCAACGAGGTGAAACAAAGTCATTTCCCCTTGTATTCCCAGAATCTTGGAGTCAGGAAGATCTCCGTGGTGTTCATGCTCAATTCACAGTTGAGTGCAAGGAACTATTCTACAGAGAATTGCCGCCGTTGGATGACTCCCTAGCCGATAAGCTTCTTCCAGGCTCTACAACCCTTGAACAGGTCAAGGAAGCATTGCTACAAAGATGCCTTGAAGTGGAGCAAACAGCTAGAGATCAAGCAACGGACAATGCAATTCTTGACCAGCTTTGCAAGATGGTGGAAGTTGATATTCCTCAATCCATATTCGAGGAGCAAGGCAGGCAGCTATATGGAGCCAAACTATTGCAGATACAGGCAAACGTGAAATTAAACGAACAGCAGTTGGCTACTCTATCTACTCCTAAGGCTGTGAAGGAGTACCTTGAAAATCAGAAGGACAACATTAGGCGTGTTATAAAACAGAATCTTGCAGTTGGAGATATATTTAAACGTGAAAATTTGCAGAGCCATTTACCGATCCGGGAATGGTGA 1434 44.91 MEVLGCSKVFVWSPPCLVEWRNGGAWSKSVKLQPLHLIRPLQTRAPTSCRFATTSSPSPPDDVAPKIDKLPEDLDISETQEPNSTVRLSVGVPPAVCQDCHTRTIAEFMKQAKIPGFRPGKQVPETILLSYVGKSNVQKAVVESILKRTLPHAMSSVQGRALKDSVRIASKFSDLEHTLFSQGSLRYDIIVDVAPEIRWVPENGYRNLKVLVEIDNNEIDAQKASQQELKRRHKSLGILRIVTDRGLQIGDVAVINISATTIGQDQSSGQKIPSAESKGYNFDTEDGDKVLPGFLDSLTGIQRGETKSFPLVFPESWSQEDLRGVHAQFTVECKELFYRELPPLDDSLADKLLPGSTTLEQVKEALLQRCLEVEQTARDQATDNAILDQLCKMVEVDIPQSIFEEQGRQLYGAKLLQIQANVKLNEQQLATLSTPKAVKEYLENQKDNIRRVIKQNLAVGDIFKRENLQSHLPIREW 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 40361954 40366650 - Sed0026759.2 Sed08g2980 724756

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed08g2980 477 Gene3D - 235 342 IPR046357 GO:0003755(InterPro)
Sed08g2980 477 Gene3D - 74 207 IPR036611 GO:0006457(InterPro)|GO:0015031(InterPro)
Sed08g2980 477 FunFam Trigger factor 74 197 - -
Sed08g2980 477 Pfam Bacterial trigger factor protein (TF) 77 222 IPR008881 GO:0006457(InterPro)|GO:0015031(InterPro)
Sed08g2980 477 SUPERFAMILY Trigger factor ribosome-binding domain 75 209 IPR036611 GO:0006457(InterPro)|GO:0015031(InterPro)
Sed08g2980 477 PANTHER TRIGGER FACTOR CHAPERONE AND PEPTIDYL-PROLYL CIS/TRANS ISOMERASE 73 469 IPR005215 GO:0003755(PANTHER)|GO:0015031(InterPro)|GO:0043022(PANTHER)|GO:0043335(PANTHER)|GO:0044183(PANTHER)|GO:0051083(PANTHER)|GO:0061077(PANTHER)
Sed08g2980 477 SUPERFAMILY Triger factor/SurA peptide-binding domain-like 344 469 IPR027304 -
Sed08g2980 477 SUPERFAMILY FKBP-like 241 345 - -
Sed08g2980 477 PIRSF Trigger_factor 74 471 IPR005215 GO:0015031(InterPro)
Sed08g2980 477 FunFam Trigger factor 241 342 - -
Sed08g2980 477 Pfam Bacterial trigger factor protein (TF) C-terminus 358 469 IPR008880 GO:0006457(InterPro)|GO:0015031(InterPro)
Sed08g2980 477 Gene3D - 208 469 IPR037041 GO:0006457(InterPro)|GO:0015031(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed08g2980 K03545 - - csv:101219032 727.243
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2979 Sed-Chr8:40355084 Sed08g2980 Sed-Chr8:40361954 3.40E-269 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g573 . . . . . . Bma10g00578 . . Cmo06g00892 . . . . . . . . . . . . . . Cla10g00479 Cam10g0466 Cec10g0486 Cco10g0474 Clacu10g0486 Cmu10g1314 Cre10g0718 . . . Cone15ag1194 . Csa03g00480 . Cme06g02841 . . Bda05g00697 . . Bpe03g00772 . . Sed08g2980 . . . . . . . . Bhi11g00581 Tan01g1746 Cmetu06g1014 . Hepe06g0018 . . . . . . . . . Lsi05g00567 . Chy06g01842 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011555 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 2 1 1 30