Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0025 ATGGACGATGATGAGGGTTGCGGCATTGCCAAAACCATCTGCTCCATCTGCTACGAGGACCTAAAGCCCATCATCGAGGATCTTCAATCCATCTCTATCTGCGGCCATGTCTTCCACGAACTCTGTTTACAGCAATGGTTTGAGTATTGTCCGAATGGGAAGAAGAAGTACAGCTGCCCTATGTGCAAGCAGTCGTGTGTGGCTAAAGATGTTGCGCGCCTCTATTTTCAGTCTGTTGGGGATGCCAATGATTCCGCGCTTCCTAAGAAACCGACCGATTGGGTTGACAGAGATCCGGCATTGTTGAGAACCGAGGTGAAGAGGCTGGAGATGATGGTATCTGTGCTGAACTCCACATTGGAGCATCAGGGGAAGGATCTTAAACAGCTCAGCGAGGAGCTTCATCTTTGCCAGGATGAAGTGAAGAAGGAAGTGGGCTTGAGGAGTGAAGCCATGAAACAAAAAGCATTAATGTCTCAACTGCTTCACACGAAATTTGAGGAACTTGATAAATCAACTATTGAGTGCAAAAGGTTGAATGAAAGAAGTATGGCTTTGGCTAAAGAGCTTGCAGCTTTCAAGTTGGTATCTGAATTGGATCTTGATGAAGAGGAGGTTCTAAAACTTTCTTCATTGGGCAGTGGAGCAGACAATAAAGACACAGTTGATATTCTAAGAAAATCCTTGGTCCTGCGTAATAGGAGCTACAAAGAACTGATGGCAAAGTGCAATCATCTTGGAAGGGGAGAGGCTCGCTCTTGTAAGAAACTTGAAAAGGCAAAAGAGAAAATAAATAAGCTGAAGGTAAGGGTCCAAGAACTAGAAAAAGCCATTGAAGATAAAGACAATGAAGTTTTGAGAGGCTTGAAGGATGCAAAAAAAGATAGCATTCAAGGGGATCAGAGTAGTATGTGTTGTAAATGTAACATGATACCAACCACAAATAAGCCTGCTGGTTCACTATATGCTTCAGTTTCAACTGCAAGTCAGATCAACGAAACACCGTCTTCTAGAAAAAGGAAATCTTTTGAATTTGCTGGTGATGTTTGTACAAATGATGTGAACTTGGTAGATACAGCTAAGGGCATGTACTCCTCAAAGGATAAGAAAAATTTAGAGCTTTCTAAAGTAGAGCATGCCAATTTAAGTCCTAATTTACAACGCCAAATAAGTGAGGAAGAAGCAGACCGAAGGCCATACCATCCTCAGTTGACAAGTTGCAATTTGGTCCGTAAAAAAGCAGCAGAAAGTACAACCAACATAGTGAATAACAAGCCTTCTACACCTACTGTCAATAATGCAGGCAGGACTGCCGTACCTGGGGATGAATGCATGCCTATAGCGGTTGAAGCCACTGCAGAATGTGAACCTGTACTTATTAACATCAGACGGGAATCCTCGAGCAACTTGACACTTAATAAACCAGGTACTGGCACATTTTAA 1443 42.76 MDDDEGCGIAKTICSICYEDLKPIIEDLQSISICGHVFHELCLQQWFEYCPNGKKKYSCPMCKQSCVAKDVARLYFQSVGDANDSALPKKPTDWVDRDPALLRTEVKRLEMMVSVLNSTLEHQGKDLKQLSEELHLCQDEVKKEVGLRSEAMKQKALMSQLLHTKFEELDKSTIECKRLNERSMALAKELAAFKLVSELDLDEEEVLKLSSLGSGADNKDTVDILRKSLVLRNRSYKELMAKCNHLGRGEARSCKKLEKAKEKINKLKVRVQELEKAIEDKDNEVLRGLKDAKKDSIQGDQSSMCCKCNMIPTTNKPAGSLYASVSTASQINETPSSRKRKSFEFAGDVCTNDVNLVDTAKGMYSSKDKKNLELSKVEHANLSPNLQRQISEEEADRRPYHPQLTSCNLVRKKAAESTTNIVNNKPSTPTVNNAGRTAVPGDECMPIAVEATAECEPVLINIRRESSSNLTLNKPGTGTF 480
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 226750 231869 + Sed0003221.3 Sed09g0025 724789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0025 480 ProSiteProfiles Zinc finger RING-type profile. 14 63 IPR001841 -
Sed09g0025 480 Pfam Ring finger domain 13 63 IPR001841 -
Sed09g0025 480 SMART ring_2 14 62 IPR001841 -
Sed09g0025 480 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 9 184 IPR013083 -
Sed09g0025 480 SUPERFAMILY RING/U-box 13 69 - -
Sed09g0025 480 Coils Coil 254 284 - -
Sed09g0025 480 CDD RING-H2 14 63 - -
Sed09g0025 480 PANTHER RING ZINC FINGER PROTEIN-RELATED 9 476 - -
Sed09g0025 480 Coils Coil 120 140 - -
Sed09g0025 480 SMART ringv_2 13 63 IPR011016 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0023 Sed-Chr9:226750 Sed09g0025 Sed-Chr9:226750 3.30E-270 dispersed
Sed09g0024 Sed-Chr9:226750 Sed09g0025 Sed-Chr9:226750 3.20E-270 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0025 K11985 - csv:101218841 672.159