Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0034 ATGGAGACCGGTTCATTTGATCATAACATCAGGGGAGTGCCCACTCATGGCGGTCAATACATTCAATACAATGTGTATGGGAATCTATTTGAAGTTTCAAGGAAGTATATTCCACCCATTAAGCCAGTTGGGAGAGGAGCTTATGGTATTGTTTGTGCTGCTTTGAATTCAGAAACAAACGAGGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGGATTGATGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTAGACACATGGATCATGAAAATATTATTGTTCTTAAAGATATTGTAAGACCTCCTCAGAAGGATAATTTCAATGATGTGTATCTTATTTATGAATTGATGGATACTGATCTAAATCAGATAATACGATCCAATCAAGCCTTGAACGACGATCATTGCCGGTACTTTCTGTACCAGTTGTTACGAGGGCTAAAATACGTGCATTCTGCTAATGTTCTACACCGTGATTTGAAACCAGGCAACTTGTTTCTTAATGCAAATTGTGACCTAAAAATTGGAGATTTTGGACTTGCAAGGACAACTTCTGAAACTGATTTTATGACCGAGTATGTCGTTACTCGGTGGTACCGTGCACCGGAATTGCTTCTTAATTGTTCAGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGACAGCCACTCTTTCCTGGAAAAGATTATGTCCATCAGCTAAAACTTATTACTGAGCTCATTGGGTCACCTGACGACTCAAGCCTCGGATTCTTACGAAGTGACAATCCACGAAGATATTTTCGAAATCTTCCTCACTTCCCCAAGCAACAGTTTTCCACTAGATTTCCCACCATGTCTCCTGCTGCTATTGACTTGCTGGAGAAGATGCTAATCTTTGATCCTACTAAGCGCATTACAGTTGATGAGGCACTGTGCCATCCATACTTGTCACCCCTTCATGATATCAATGAGGAGCCAGTATGTCCGAGGCCTTTCAATTTTGATTTCGAGCAACCGTCGTATACCGAAGAAAACATAAAGGAACTTGTATGGAGAGAATCTGTGAAGTTCAACCCGGATCCGGCTTATTGA 1113 40.52 METGSFDHNIRGVPTHGGQYIQYNVYGNLFEVSRKYIPPIKPVGRGAYGIVCAALNSETNEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENIIVLKDIVRPPQKDNFNDVYLIYELMDTDLNQIIRSNQALNDDHCRYFLYQLLRGLKYVHSANVLHRDLKPGNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRQPLFPGKDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRNLPHFPKQQFSTRFPTMSPAAIDLLEKMLIFDPTKRITVDEALCHPYLSPLHDINEEPVCPRPFNFDFEQPSYTEENIKELVWRESVKFNPDPAY 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 288220 292561 + Sed0011407.1 Sed09g0034 724798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0034 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Sed09g0034 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Sed09g0034 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 359 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed09g0034 370 FunFam Mitogen-activated protein kinase 22 131 - -
Sed09g0034 370 CDD STKc_TEY_MAPK 30 366 - -
Sed09g0034 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0034 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0034 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
Sed09g0034 370 SMART serkin_6 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0034 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0034 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Sed09g0034 370 FunFam Mitogen-activated protein kinase 121 350 - -
Sed09g0034 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g1021 Sed-Chr1:7594925 Sed09g0034 Sed-Chr9:288220 1.20E-167 dispersed
Sed01g3856 Sed-Chr1:67813320 Sed09g0034 Sed-Chr9:288220 7.10E-184 dispersed
Sed05g0755 Sed-Chr5:5911782 Sed09g0034 Sed-Chr9:288220 4.20E-184 dispersed
Sed09g0034 Sed-Chr9:288220 Sed10g1377 Sed-Chr10:29667852 4.50E-119 dispersed
Sed04g2249 Sed-Chr4:36227124 Sed09g0034 Sed-Chr9:288220 8.90E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79736 PF00069 Pkinase 1.30E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0034 K20600 - csv:101215189 721.465