Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sed09g0036 | ATGGGCTTTCCGGTGGGTTGCACGGAGGTTTTCTTCCCCACCATACTCCTCCACTTCCTCTCTCTCCTCGATTTCCTCAAATCCCTAATTCTCTCTCTCTTCCGCCTCCTCGGCCTGCCGGAATTTCTCCACTCCGCCGCCGCCATCTCGCCGGACCTCCCATTCCCCATCCACCCGCCGCCCTCCGCCGTCATCCTCCGGGAATTCCTCCCCGTCGTCAGATTCTCCGACCTCCCACCTGCGGCGGCGGAGACCTGCGCCGTTTGCCTGTTCGAGTTCGAAGGGGCGGAGGAGATCCGACGGCTGAGGAACTGCCAACACATATTTCATAGAGGGTGCGTGGACCGTTGGATGGATCACGATCAGAAGACGTGTCCGCTTTGTAGAGCCCCGTTTGTGCCTGATGAGATGATGGATGAGTTTAATCAACGGCTCTGGGCTGTCTCTGGGATTGCTGAGTTGGATTCTGAGTTCAACTCGGTTTTAGCAATGTCATGCCACTTTATTTGGTGGCTTTTGCTAAATAAGTGTTTTGTTTTTCCTTTTTTGGGTTAA | 555 | 54.77 | MGFPVGCTEVFFPTILLHFLSLLDFLKSLILSLFRLLGLPEFLHSAAAISPDLPFPIHPPPSAVILREFLPVVRFSDLPPAAAETCAVCLFEFEGAEEIRRLRNCQHIFHRGCVDRWMDHDQKTCPLCRAPFVPDEMMDEFNQRLWAVSGIAELDSEFNSVLAMSCHFIWWLLLNKCFVFPFLG | 184 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 317372 | 317973 | + | Sed0015424.1 | Sed09g0036 | 724800 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sed09g0036 | 184 | ProSiteProfiles | Zinc finger RING-type profile. | 86 | 129 | IPR001841 | - | |
| Sed09g0036 | 184 | PANTHER | RING ZINC FINGER PROTEIN-RELATED | 10 | 141 | - | - | |
| Sed09g0036 | 184 | SUPERFAMILY | RING/U-box | 85 | 135 | - | - | |
| Sed09g0036 | 184 | SMART | ring_2 | 86 | 128 | IPR001841 | - | |
| Sed09g0036 | 184 | Pfam | Ring finger domain | 85 | 129 | IPR001841 | - | |
| Sed09g0036 | 184 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 136 | IPR013083 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Sed01g0593 | Sed-Chr1:4307429 | Sed09g0036 | Sed-Chr9:317372 | 8.80E-13 | dispersed | |
| Sed01g3864 | Sed-Chr1:67899819 | Sed09g0036 | Sed-Chr9:317372 | 2.40E-38 | dispersed | |
| Sed05g3047 | Sed-Chr5:40855263 | Sed09g0036 | Sed-Chr9:317372 | 2.80E-11 | dispersed | |
| Sed09g0036 | Sed-Chr9:317372 | Sed12g0156 | Sed-Chr12:901790 | 5.90E-27 | dispersed | |
| Sed09g0036 | Sed-Chr9:317372 | Sed14g1076 | Sed-Chr14:20273968 | 3.40E-14 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sed09g0036 | K16281 | - | csv:101220424 | 233.802 |