Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0043 ATGGCTTCTCTTCTTAGAAAGCAAGCTATCAATGGCTGCTTTCTCCTCCTTTTCGGCCTCTCCCTCTCCCTCGCATCTCTCTCCCTCGCCGTCACCGATGCCGAAGTTTCGTTCCTCTCCGGCCATCAATTCTTGGCTCTGAAAGAACACGAAAAACTCCCCGAAAACCACAAATACGAAATCGACATTCCCGACACTTTTCCTAATGTGAGGTTGAAAAATGCTTATGTTGCCCTTCAAGCTTGGAAATTGGCCATGTATTCCGACCCTTTAAACACCACTGCCAATTGGGTTGGTGCCAAGGTGTGCTCTTACACTGGCGTTTTCTGTGAGGCTGCGCTTGATGACCCCAAAGTGGAGGTTGTGGCTGGCATTGACTTGAACCATGCTGACATTGCTGGCTACTTGCCGCCCGAGCTCGGCCTCTTGACGGATGTTGCTCTCTTCCATATCAACTCTAATAGGTTTTGCGGCATCATTCCTACTACAATGTCTAAGCTCACTCTCATGTTCGAGTTCGATGTCAGCAACAATCGCTTCGTCGGTCACTTCCCTTTCGTTGTCCTCGAATGGCCCAACCCTAAGTATCTCGATATTAGGTACAATGACTTTGAAGGAGAAGTTCCGCCTATGTTGTTTACGAAGACGTTTGATGCCATATTCTTGAACAATAATAGATTCACGTCGCTCATCCCGGACACCATAGGGAACTCTTCAGTCTCGGTTGTGTCGTTCGCCAACAACGAGTTCCATGGTTGCATTCCTAAAACCATTGGCCAAATGTCTAACCTCAATGAGATCCTCTTCCTCGGGAACAAGCTCGGTGGGTGCCTCCCGCCCGAGATTGGAAGCATGGGGAATTTGACAGTGTTTGATGTGAGCTCCAATGGTTTCGTCGGCGAGTTACCTAAATCCCTTTCGAAGCTCAAGAGTTTGGAGATTATAGATGTTAGTGACAATCAATTCAGGGGAACGGTATTTGGAGAGATATGCAAATTGCCCAAGTTGAAGAATTTTAATGTGTCGTTTAATTATTTTAATGGGGTAAATTCAGAGTGTGTGGAGAACAAAAAAATTGAGAATCTTTTTGATGATATTGAAAATTGTGCGGCGAATCGACCAAAACAAAGAGATAGTCAAAGTTGCAGCTCTGTTTTGAAGAAATCGGTTAATTGTGGAAATTGTGGTGGTTCGAACTCTGATCTTGATGATTCTAGTGAACAATCTCCGTCCCCGAGATATCGATCCCCACCACCTCCAATGATAAATATTGAATCTCCGCCGTCGCCGGTTCGATCTGAGTCTCCCCCGTTGTCGGACGAGTTCTCGCCGCCGACCTCGGTTCAATCCTTGCCACCTACTTCTGTTCCTTCCTTACCGCCGTCCTCGGCTCCATCCCTTCCGCCGTCCTCGGTTCCATCCCTACCGCCGTCCCCAGTCCAATCTCCTCTAACCCCAGTTCAATCTTTACCACCGACCCCAGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTACCACCTTCCCCAGTTCAATCCTTACCGCCTTCCCTGGTTCAATCCTTACCTCCGTCCCCGGTTCAATCCTTACCTCCGTCCCCGGTTCAATCCTTACCGCCGTCCTCGGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTATCGTCGTCCCCTGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTACCGCCGTCCCCGGTTCAATCCTTACCGCCGTCCCCAGTTCAATCCCCGATGTCCTCAGTTCAATCCCCGTTGTCCCCGGTTCAATCCCCGTTGTCCCCGGTTCAATCCCCGTTGTCCTCGGTTCAATCCCCGTTGTCCTCGGTTCAATCCCCGTTGTCCTCGGTTCAATCCCCGTTGTCCTCGGTTCAATCCCCATTGTCCTCGGTTCAATCCCCATTGTCCCCGGTTCAATCCCCATTGTCCTCGGTTCAATCCCCATTGTCCCCGGTTCAATCCCCGTTGTCCTCGGTTCAATCCCCGTTGTCCTCGGTTCAATCCCCGTTGTCCTCGGTTCAATCCCCATTGTCCTCGGTTCAATCCCCGATGTCCCCGGTTCAATCCCCTCCATCCTTGGTTCAATCCCCTCCGTCCTCGGTTCAATCCCCTTTGTCCTCGGTTCAATCCCCTTTGTCCTCGGTTCAATCCCCTTTCTCCTCGGTTCAATCCCCTCCGACCTCGATTCAATCCCCTCCGACTTCGGTTCAATCCCCACCGATGTACTCTCCACCGATGTACTCTCCACCTCCACCCGTCCACTCCCCTCCTCCACCCGTTCATTCCCCACCTCCACCGGTTCATTCCCCACCTCCACCGGTGCACTCCCCACCTCCACCGGTCCACTCCCCACCACCACCGGTCCACTCCCCACCTCCACCGGTCCACTCCCCACCTCCGCCGGTCCACTCCCCACCTCCACCGGTCCACTCCCCTCCACCGCCGGTCCACTCCCCACCTCCCTCGGTCCACTCCCCTCCACCACCGGTCCACTCCCCTCCACCACCGGTCCACTCCCCACCTCCCCCGGTCCACTCCCCTCCACCGCCGGTGCACTCCCCACCTCCCCCGGTGCACTCCCCACCTCCCCCGGTCCACTCCCCACCTCCCCCGGTCCACTCCCCTCCACCGCCGGTCCACTCCCCTCCACCGCCGGTCCACTCCCCACCTCCCCCGGTGCACTCCCCACCTCCCCCGGTGCACTCCCCACCTCCCCCGGTCCACTCCCCACCTCCCCCGGTCCACTCCCCACCTCCCCGGTCCACTCCCCTCCACCGCCCGTCCACTCCCCACCTCCCGGTCCACTCCCCACCTCCCCGGTCCACTCCCCACCTCCCCCGGTCCACTCCCCTCCTCCACCTGTCCACTCCCCACCTCCCCCGGTGCACTCCCCGCCCCCACCTGTGCACTCTCCGCCACCACCCATCTTTTCTCCTCCGCCACGGGTCTACTCTCCACCACCACGGGTCTACTCTCCACCACCGGTCCAATCTCCACCACCACTGGCTGCATCTCCTCCTCCTACCGGTGGTTCTTCGCCGCCGGCGTTCGACGACATCATCCTTCCACCGAACATTGGTTTCGAATATGCATCGCCACCTCCACCACTCTTCCCCGGCTACTGAGGGGTCTGCTCATCTTTAA 3264 56.28 MASLLRKQAINGCFLLLFGLSLSLASLSLAVTDAEVSFLSGHQFLALKEHEKLPENHKYEIDIPDTFPNVRLKNAYVALQAWKLAMYSDPLNTTANWVGAKVCSYTGVFCEAALDDPKVEVVAGIDLNHADIAGYLPPELGLLTDVALFHINSNRFCGIIPTTMSKLTLMFEFDVSNNRFVGHFPFVVLEWPNPKYLDIRYNDFEGEVPPMLFTKTFDAIFLNNNRFTSLIPDTIGNSSVSVVSFANNEFHGCIPKTIGQMSNLNEILFLGNKLGGCLPPEIGSMGNLTVFDVSSNGFVGELPKSLSKLKSLEIIDVSDNQFRGTVFGEICKLPKLKNFNVSFNYFNGVNSECVENKKIENLFDDIENCAANRPKQRDSQSCSSVLKKSVNCGNCGGSNSDLDDSSEQSPSPRYRSPPPPMINIESPPSPVRSESPPLSDEFSPPTSVQSLPPTSVPSLPPSSAPSLPPSSVPSLPPSPVQSPLTPVQSLPPTPVQSLPPSPVQSLPPSPVQSLPPSLVQSLPPSPVQSLPPSPVQSLPPSSVQSLPPSPVQSLPPSPVQSLPPSPVQSLPPSPVQSLPPSPVQSLSSSPVQSLPPSPVQSLPPSPVQSLPPSPVQSPMSSVQSPLSPVQSPLSPVQSPLSSVQSPLSSVQSPLSSVQSPLSSVQSPLSSVQSPLSPVQSPLSSVQSPLSPVQSPLSSVQSPLSSVQSPLSSVQSPLSSVQSPMSPVQSPPSLVQSPPSSVQSPLSSVQSPLSSVQSPFSSVQSPPTSIQSPPTSVQSPPMYSPPMYSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPSVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPPVHSPPPRSTPLHRPSTPHLPVHSPPPRSTPHLPRSTPLLHLSTPHLPRCTPRPHLCTLRHHPSFLLRHGSTLHHHGSTLHHRSNLHHHWLHLLLLPVVLRRRRSTTSSFHRTLVSNMHRHLHHSSPATEGSAHL 1087
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 356135 359508 + Sed0026732.1 Sed09g0043 724807

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0043 1087 MobiDBLite consensus disorder prediction 580 595 - -
Sed09g0043 1087 Gene3D Ribonuclease Inhibitor 117 369 IPR032675 -
Sed09g0043 1087 MobiDBLite consensus disorder prediction 397 992 - -
Sed09g0043 1087 MobiDBLite consensus disorder prediction 397 411 - -
Sed09g0043 1087 Pfam Leucine Rich Repeat 287 309 IPR001611 GO:0005515(InterPro)
Sed09g0043 1087 SUPERFAMILY L domain-like 88 357 - -
Sed09g0043 1087 MobiDBLite consensus disorder prediction 596 613 - -
Sed09g0043 1087 FunFam Leucine-rich repeat receptor protein kinase EMS1 235 327 - -
Sed09g0043 1087 MobiDBLite consensus disorder prediction 777 985 - -
Sed09g0043 1087 MobiDBLite consensus disorder prediction 412 434 - -
Sed09g0043 1087 MobiDBLite consensus disorder prediction 450 579 - -
Sed09g0043 1087 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 14 929 IPR051582 -
Sed09g0043 1087 MobiDBLite consensus disorder prediction 614 776 - -
Sed09g0043 1087 FunFam Leucine-rich repeat extensin-like protein 1 76 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0043 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g2625 Sed-Chr1:20317195 Sed09g0043 Sed-Chr9:356135 3.60E-54 dispersed
Sed09g0043 Sed-Chr9:356135 Sed12g1856 Sed-Chr12:29807283 4.40E-37 dispersed
Sed09g0043 Sed-Chr9:356135 Sed11g0071 Sed-Chr11:675560 4.90E-36 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed12g1856 . 53 261 Leucine-rich Repeat extension Gene Families AT1G62440 65.7 1.1e-53 209.5
Sed10g1400 . 67 412 Leucine-rich Repeat extension Gene Families AT1G62440 65.0 2.8e-49 194.9
Sed02g1338 . 35 369 Leucine-rich Repeat extension Gene Families AT1G62440 60.3 3.1e-48 191.4
Sed12g0961 . 69 394 Leucine-rich Repeat extension Gene Families AT1G62440 61.8 6.8e-48 190.3
Sed01g2625 . 37 410 Leucine-rich Repeat extension Gene Families AT1G62440 58.5 2.2e-46 185.3
Sed11g0071 . 65 233 Leucine-rich Repeat extension Gene Families AT1G62440 69.8 3.3e-42 171.4
Sed05g1943 . 51 380 Leucine-rich Repeat extension Gene Families AT1G62440 54.2 4.4e-39 161.0
Sed12g1856 . 24 403 Leucine-rich Repeat extension Gene Families AT4G13340 79.8 5.4e-82 303.5
Sed11g0071 . 30 412 Leucine-rich Repeat extension Gene Families AT4G13340 74.7 1.1e-66 252.7
Sed10g1400 . 39 415 Leucine-rich Repeat extension Gene Families AT4G13340 71.2 8.6e-64 243.0
Sed12g0961 . 69 396 Leucine-rich Repeat extension Gene Families AT4G13340 67.5 1.5e-52 205.7
Sed02g1338 . 35 368 Leucine-rich Repeat extension Gene Families AT4G13340 65.8 6.4e-51 200.3
Sed01g2625 . 21 217 Leucine-rich Repeat extension Gene Families AT4G13340 65.3 4.9e-43 174.1
Sed05g1943 . 51 381 Leucine-rich Repeat extension Gene Families AT4G13340 59.6 3.0e-40 164.9
Sed09g0043 . 21 227 Leucine-rich Repeat extension Gene Families AT4G13340 58.5 2.5e-39 161.8
Sed12g1856 . 26 404 Leucine-rich Repeat extension Gene Families AT3G24480 78.2 3.0e-86 317.0
Sed10g1400 . 42 417 Leucine-rich Repeat extension Gene Families AT3G24480 75.3 5.6e-80 296.2
Sed11g0071 . 38 412 Leucine-rich Repeat extension Gene Families AT3G24480 74.3 1.0e-73 275.4
Sed12g0961 . 69 396 Leucine-rich Repeat extension Gene Families AT3G24480 64.1 1.1e-51 202.2
Sed02g1338 . 29 371 Leucine-rich Repeat extension Gene Families AT3G24480 61.9 1.9e-51 201.4
Sed01g2625 . 23 217 Leucine-rich Repeat extension Gene Families AT3G24480 69.0 9.6e-48 189.1
Sed05g1943 . 51 381 Leucine-rich Repeat extension Gene Families AT3G24480 56.6 3.0e-41 167.5
Sed09g0043 . 21 421 Leucine-rich Repeat extension Gene Families AT3G24480 55.0 2.5e-40 164.5
Sed12g0961 . 66 395 Leucine-rich Repeat extension Gene Families AT3G22800 71.9 3.8e-70 263.5
Sed02g1338 . 10 369 Leucine-rich Repeat extension Gene Families AT3G22800 66.8 3.0e-67 253.8
Sed12g1856 . 63 387 Leucine-rich Repeat extension Gene Families AT3G22800 67.6 5.2e-51 199.9
Sed05g1943 . 51 380 Leucine-rich Repeat extension Gene Families AT3G22800 65.0 1.5e-50 198.4
Sed10g1400 . 53 413 Leucine-rich Repeat extension Gene Families AT5G25550 58.8 1.1e-39 162.2
Sed12g0961 . 69 395 Leucine-rich Repeat extension Gene Families AT5G25550 58.1 1.9e-39 161.4
Sed12g1856 . 37 399 Leucine-rich Repeat extension Gene Families AT5G25550 52.7 1.6e-38 158.3
Sed11g0071 . 51 231 Leucine-rich Repeat extension Gene Families AT5G25550 70.2 1.8e-37 154.8
Sed02g1338 . 9 361 Leucine-rich Repeat extension Gene Families AT5G25550 53.8 2.3e-37 154.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92