Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0064 ATGGACCGAAGGGACCCGATGACGATATCGGGCTCGCAATCGTTCTACATGCAAAGGGGAATTGGCAATTCTGGCTCTGGAACACAGGGCTTGCGTTCCATAACTAACCCTAATGTGGCATTTCAGGCCAATACTGGAGGAAACAATGTTGGATCAGGGTTGCCTATGGACCCTAACCCTGGAATTGCACCTTATGGTGGCAATGTTGGGGCTCAATCTGGTGGAATGGTTTCGAGCGAGCCCGCGAAACGAAAGCGAGGCCGGCCTCGTAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCTTCTCCATCTGCTCCAAATCCAGCCAATGTAGGTTCTTCGCCGAAGCGGGGAAGAGGACGACCCCCCGGGTCAGGAAAGAAGCAACAATTAGCTTCTATGGGTGAAACACTTTCTGGATCAGCTGGCATGGGTTTTACTCCACATGTGATCACCATTGGAATAGGAGAAGACATTGCTGCCAAAATTATGTCCTTTTCGCAGCAGGGACCGAGAGTTCTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTAACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTTGAGATAATATGTCTGTCAGGCTCATACTCACTTGGAGAAACCGGGGGCTCTAGGAACCGCGCTGGTGGTCTGAGTGTCTCCCTTGCCAGCCCTGATGGTCGTGTTGTTGGCGGCGGTGTAGGAGGAGCACTTATCGCAGCAACTCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGAAGTTCGAAGTCAAAGTACAAGAAGCGAGAAGCTATTGAAGGCGTGATAGACTCGGATCATCAAGCAGTGGATCACGCAGTTGCAATGGCGAACGTGCAGCAGAATCAGAATCTGACTCCAACCTCCTCGGTTAATATGTGGCCGTCCTCGCAGTCACTGGACATGCGCAACGCTCACATGGACATCGATCTGATGCGCGGGCTGAAGGAGACTCAATTCGATTGGATGTAG 1032 51.84 MDRRDPMTISGSQSFYMQRGIGNSGSGTQGLRSITNPNVAFQANTGGNNVGSGLPMDPNPGIAPYGGNVGAQSGGMVSSEPAKRKRGRPRKYGTEGTVSLALSPSPSAPNPANVGSSPKRGRGRPPGSGKKQQLASMGETLSGSAGMGFTPHVITIGIGEDIAAKIMSFSQQGPRVLCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYSLGETGGSRNRAGGLSVSLASPDGRVVGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQAVDHAVAMANVQQNQNLTPTSSVNMWPSSQSLDMRNAHMDIDLMRGLKETQFDWM 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 499521 504479 + Sed0024102.1 Sed09g0064 724828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0064 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Sed09g0064 343 CDD DUF296 150 264 IPR005175 -
Sed09g0064 343 Gene3D - 151 283 - -
Sed09g0064 343 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Sed09g0064 343 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Sed09g0064 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
Sed09g0064 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 60 316 IPR039605 GO:0003680(InterPro)
Sed09g0064 343 MobiDBLite consensus disorder prediction 98 114 - -
Sed09g0064 343 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Sed09g0064 343 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Sed09g0064 343 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Sed09g0064 343 MobiDBLite consensus disorder prediction 1 137 - -
Sed09g0064 343 MobiDBLite consensus disorder prediction 7 52 - -
Sed09g0064 343 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0800 Sed-Chr5:6287196 Sed09g0064 Sed-Chr9:499521 9.90E-76 dispersed
Sed05g0863 Sed-Chr5:6958647 Sed09g0064 Sed-Chr9:499521 9.90E-62 dispersed
Sed09g0064 Sed-Chr9:499521 Sed12g0242 Sed-Chr12:1406829 3.30E-47 dispersed
Sed13g1199 Sed-Chr13:17102459 Sed09g0064 Sed-Chr9:499521 2.90E-59 transposed
Sed04g2231 Sed-Chr4:36068528 Sed09g0064 Sed-Chr9:499521 1.90E-169 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0064 - - - 0.0