Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0079 ATGAGTTTTGGGGGTTTTCTCGACGGCGGCGGCGGAGGAGGTGGCGGCGGCGGCGGTGGTGCTCGAATCTTAGCCGATTTGCCTTACGGCGGCGGCGGCGGAAATATGACTTCCGGCGCAATGGCTCCGCCGCATCTAATCAAATCGATGTTCAACTCTCCCGGACTCTCACTCGCTCTTACGAACATGGACGGCGGCGGCGGGCAGGGGGATTTGGCTGCCCGATTGCCCGAGGGTTTCGAGCATAATAATGTTGGGAGAAGAGGCAGAGAAGAAGAACATGAAAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGACCAGGACGCCGCCGACAACCCTCCGAGGAAAAAACGTTATCACCGACATACCCCTCAGCAAATCCAAGAACTCGAATCTGTTTTTAAAGAGTGTCCTCATCCTGATGAGAAGCAACGGCTTGAGTTGAGTCGAAGATTGTGTTTAGAAACTAGACAAGTTAAGTTTTGGTTTCAAAATCGAAGAACCCAAATGAAGACCCAATTGGAACGACATGAGAATACTTTGCTTAGACAGGAGAATGATAAGCTTAGAGCTGAGAATATGTCGATTCGGGATGCTATGAGGAATCCGATCTGTTCGAACTGTGGCGGTCCAGCTATTATTGGAGAGATTTCGCTGGAAGAGCAGCAGTTGAGGATCGAGAATGCTCGGTTGAAGGATGAGTTGGATCGGGTTTGCGCGCTTGCGGGAAAGTTTCTTGGTAGGCCGTTTTCGTCGCTGGCTAACTCCATTGCACCTCCATTGCCGAGTTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGAGTATGGCGACTTCAATGCCGATTGGGCCGGATTATGGAGGTGGGTTATCAGGTAATCTGTCTGTTGTTCAGTCGTCTGCGAGGCCTACGCCGGGGATGGGACTTGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCAATGGATGAATTGGTTAAAATGGCTCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAGTACATGAGGACATTCACTCCTTGCATCGGCATGAAACCAAACGGTTTTGTCACCGAGGCATCGAGAGAAGCTGGCATGGTGATCATCAACAGCTTGGCTCTCGTCGAGACATTGATGGACTCGAATCGATGGGCAGAGATGTTTCCATGTATGATTGCTCGAACCACGACCACCAACGTGATCTCCAGTGGTATGGGTGGAACGAGAAACGGTGCACTTCAACTGATGCATGCTGAGCTTCAAGTGCTCTCGCCATTAGTACCGGTTAGGGAAGTCAATTTTCTGCGGTTTTGCAAGCAGCATGCTGAAGGTGTTTGGGCAGTCGTCGACATCTCCGTCGACGCCATGAGAGAATCTCCAACTGGTGGCTCCTCATTCCTCAACTGCAGAAGACTTCCTTCTGGGTGTGTTGTTCAAGACATGCCCAATGGATATTCCAAGGTTACATGGGTTGAACATGCGGAGTACGATGATAGCCAAGTCCACCAGCTGTACCGGCCCCTTCTCAGCTCCGGTACGGGATTTGGAGCGCAACGATGGGTAGCCACCCTTCAACGGCAATGTGAATGCCTCGCCATCCTCATGTCAACTGCTGTACCCGTCCGAGATCACACCGCCATAACTGCAGGTGGGCGACGGAGCATGCTGAAGCTAGCACAACGAATGACAGCCAACTTCTGCGCAGGCGTATGTGCATCCACGGTGCACAAATGGAACAAGCTGAACGCTGGGAGTGTGGACGAGGACGTGCGTGTCATGACACGAAAGAGTGTGGACGATCCGGGCGAGCCACCGGGGATCGTGTTGAGTGCCGCTACGTCGGTGTGGCTGCCAGTATCTCCCCAACGACTCTTCGATTTCCTTCGGGACGAGCGATTAAGGAGTGAATGGGACATCCTATCCAACGGTGGCCCCATGCAGGAAATGGCCCATATAGCCAAAGGGCAAGATCATGGCAATTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATTCAAACCAGAGCAGCATGTTGATTCTACAAGAGACGTGCATTGACGCAGCCGGCTCGCTTGTGGTGTACGCGCCGGTCGACATTCCGGCAATGCACGTTGTGATGAATGGCGGTGATTCAGCTTACGTGGCGCTTCTGCCTTCGGGATTTGCGATTGTACCCGATGGAGCAGTGACACGGGGTTTGTCAACGACGAATGGAAGCAGTCCGGGTGGTGGGGATGGCCCACCAAGGGTGACCGGCGGTGGGTCTCTCCTCACCGTCGCGTTTCAAATCCTCGTGAATAGTCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAACAATCTCATCTCTTGCACCGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAAACTTGA 2460 52.72 MSFGGFLDGGGGGGGGGGGGARILADLPYGGGGGNMTSGAMAPPHLIKSMFNSPGLSLALTNMDGGGGQGDLAARLPEGFEHNNVGRRGREEEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELESVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPFSSLANSIAPPLPSSSLELGVGSNGFGSLSMATSMPIGPDYGGGLSGNLSVVQSSARPTPGMGLERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASREAGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTNVISSGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDISVDAMRESPTGGSSFLNCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGTGFGAQRWVATLQRQCECLAILMSTAVPVRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTRGLSTTNGSSPGGGDGPPRVTGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 819
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 618782 625142 - Sed0007869.1 Sed09g0079 724843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0079 819 SMART START_1 324 549 IPR002913 GO:0008289(InterPro)
Sed09g0079 819 CDD START_ArGLABRA2_like 319 548 - -
Sed09g0079 819 CDD homeodomain 119 177 IPR001356 GO:0003677(InterPro)
Sed09g0079 819 ProSitePatterns 'Homeobox' domain signature. 152 175 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Sed09g0079 819 SMART HOX_1 118 181 IPR001356 GO:0003677(InterPro)
Sed09g0079 819 Coils Coil 218 238 - -
Sed09g0079 819 MobiDBLite consensus disorder prediction 80 127 - -
Sed09g0079 819 FunFam Homeobox-leucine zipper protein HDG1 107 193 - -
Sed09g0079 819 ProSiteProfiles 'Homeobox' domain profile. 117 177 IPR001356 GO:0003677(InterPro)
Sed09g0079 819 Pfam START domain 324 549 IPR002913 GO:0008289(InterPro)
Sed09g0079 819 SUPERFAMILY Bet v1-like 317 549 - -
Sed09g0079 819 SUPERFAMILY Homeodomain-like 102 177 IPR009057 -
Sed09g0079 819 Pfam Homeodomain 120 175 IPR001356 GO:0003677(InterPro)
Sed09g0079 819 MobiDBLite consensus disorder prediction 81 100 - -
Sed09g0079 819 FunFam Homeobox-leucine zipper protein GLABRA 2 324 548 - -
Sed09g0079 819 Coils Coil 171 203 - -
Sed09g0079 819 ProSiteProfiles START domain profile. 315 552 IPR002913 GO:0008289(InterPro)
Sed09g0079 819 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 98 818 IPR042160 -
Sed09g0079 819 Gene3D - 107 193 - -
Sed09g0079 819 SUPERFAMILY Bet v1-like 577 812 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2213 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 dispersed
Sed04g2215 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 dispersed
Sed04g2216 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 dispersed
Sed04g2217 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 dispersed
Sed07g1051 Sed-Chr7:7595883 Sed09g0079 Sed-Chr9:618782 8.60E-226 dispersed
Sed08g2020 Sed-Chr8:34486103 Sed09g0079 Sed-Chr9:618782 4.70E-189 dispersed
Sed08g2021 Sed-Chr8:34486103 Sed09g0079 Sed-Chr9:618782 1.60E-138 dispersed
Sed09g0079 Sed-Chr9:618782 Sed13g0162 Sed-Chr13:1025312 5.90E-252 dispersed
Sed01g4133 Sed-Chr1:70128635 Sed09g0079 Sed-Chr9:618782 4.90E-174 transposed
Sed05g2729 Sed-Chr5:38643764 Sed09g0079 Sed-Chr9:618782 7.30E-158 transposed
Sed06g2158 Sed-Chr6:45362581 Sed09g0079 Sed-Chr9:618782 1.70E-149 transposed
Sed04g2211 Sed-Chr4:36004141 Sed09g0079 Sed-Chr9:618782 0.00E+00 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39492 PF01852 START 3.50E-58 CL0209 Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0079 K09338 - csv:101222248 1447.95