Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0098 ATGGATAATTACGGTTCTTCGCCTTCATATCCATACCACAATCCGTATGCATATCCTCCTCTTGCAGCTCCTCCTCAATATCCACCACCTTCTCAATATCCTCCCCTTTCTCAATATCCACCTCCTTCTCAATATCCATCTCCTTCTCAATATCCATCTCCTTCTCAATATCCACCCCCTTCTCAATATCCACCTCCTCATTATTCACATCCAAATTCAGATCCATATGCACATCCTTATTTCCCTAATTACCCATATAACCCTTCATATGTCTCTCCCTTTGTATATCCCCCTTCTCAATATCCACCTCCCCATTCTACCCCTGTGCTTTATCCTTATTCTGATACCTCTTCTACTCATAGTAGTTCTAGGCCATCCATTCAATATCATAACAATTTTCAACATGGTACATCTCCATATCAGTATCAAGAATCTAATACCTACCCTCCACCTGAAAATCAATACCCACCTCGCCCTTCTCGTGTAAATAGCTTTTCTAGTCATTATAGGAATGATACTACTGATTCTGCCTCATCTGGTTTCCCGCCTGTTGATGATCTTTTGTCCAATGTACATTTGTCTGATCATCAACCAAATGCCCCTGCATCTCCCCCTGCACATGTGCCCGTACAACCCTCCGCTTCGTTATTGGCGAATGCGCCTCACAGTTCGAGATATGATCGGCAAAACCGGTTTTATGGTTTTCCAAATTTTTCGTTTTCTGGTTTCGGCACGGGGAATTCTAACCAAATGACTTCATCCAATAGAGGTTTGTTTTCCCTTTCAAGCTCATTCAGTGGGTCTAAACGTAGGCAAGACTTGCAGATTGTACCATTGCACAATAAAGCCTCGTTGAAAGTTTTGCTGTTACATGGAAACTTAGAGATATGGGTTAACGAGGCGAAAAACCTGCCAAATATGGACATGTTTCACAAAACCTTAGGGGATATGTTATCAAAATTACCGGGAAAAATCGAAGGACGTGTGAGTCATAAGATCACTAGCGATCCTTACGTATCGATCTCGGTAGCAAATGCAATAATCGGGAGGACGTTTGTTATCAGCAACAATGAAAATCCTATATGGAGGCAACATTTCTATGTTCCTGTTGCACATCATGCTGCTGAGGTAGTTTTTTTCGTTAAAGACAGTGATGTTGTTGGTTCACAACTAATAGGAACTGTAGTAATTCCTACAGAACAAATATATTCAGGCTCTATAATTGAGGGAACATTCCCAATCATGCAAAATGGGAAACAATGTAAACCTGGAGCTATTCTAAATGTTTCAATTCAATATACCCCAATGGAGAGGCTTAGTACTTATCATCATGGAGTAGGAGCTGGCCCTGATTATCAAGGAGTTCCTGATACATATTTCCCCCTTAGAAAGGGTGGAGCTGTGACTCTTTATCAAGATGCTCATGTTCCAGCTGGTCACCTTCCAACTTTTATGCTTGAAAATGGTACGTACTACGTACATGGGAAGTGTTGGAATGATATCTTCGATGCCGTGCGTCAGGCTCGGAGGTTGATTTACGTCACTGGGTGGTCGGTGTGGCATAAGGTGAAACTGGTTCGTGATACTGGCTATGGGACTGAGTGTACCCTTGGAGATCTCTTGAGGTCTAAGTCACAGGAAGGGGTGAGAGTTTTGCTTCTCATTTGGGATGATCCTACTTCTAGGAGCATTTTGGGGTATAAAACTGATGGTTTCATGCAAACCCACGATGAGGAAACTCGCCGTTTTTTCAAACATTCCTCTGTAAAAGTGATACTTTCTCCTCGTATGGCTGGAAAACGACATAGCTGGGTTAGGCAAAGGGAAGTTGGAACTATTTATACACACCATCAGAAAACAGTTATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATAATAGCTTTTGTTGGAGGGCTGGATTTATGTGACGGGCGGTATGATACTCCATCTCATCCCATATTTCGAACACTTCAAACAGTACACAAGGATGATTACCACAATCCTACATACACGGGTAGTGTTGCTGGTTGTCCAAGAGAACCGTGGCATGATTTGCACAGCAAAATTGACGGTCCAGCAGCATATGATGTTTTGACGAACTTTGAGGAGCGATGGAAGAGAGCTACAAAACCTCACGGCTTAAAGAAGTTGAAATTTGAAGATGCTTTGCTGCGCATTGAAAGAATTCATGACATTATTGGAATTTCTGAATCTTACTGCACTAATGAAAATGACCCTGAATCATGGCATGTGCAGATTTTTCGCTCAATTGATTCAACTTCCGTTAAAGATTTCCCAAAGGAGCCAAAAGATGCGCCAAGCAGGAACCTTGTATGTGGAAAGAATATGCTGATTGACATGAGTATACACACAGCATATGTGAAAGCCATTAGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTTATTGGGTCATCCTTCAATTGGAATTCAAACAAAGATATAGGTGCTAACAATTTGATTCCAATGGAAATTGCACTAAAGATTGCCGATAAAATCAGAGCAAATGAGAGGTTTGCTGCATATATTGTCATCCCCATGTGGCCCGAGGGCGTCCCAACGGCTGCTGCCACTCAGAGGATACTATTTTGGCAGTTCTTCGATATGCAGGATGATATATATTCATAA 2661 41.6 MDNYGSSPSYPYHNPYAYPPLAAPPQYPPPSQYPPLSQYPPPSQYPSPSQYPSPSQYPPPSQYPPPHYSHPNSDPYAHPYFPNYPYNPSYVSPFVYPPSQYPPPHSTPVLYPYSDTSSTHSSSRPSIQYHNNFQHGTSPYQYQESNTYPPPENQYPPRPSRVNSFSSHYRNDTTDSASSGFPPVDDLLSNVHLSDHQPNAPASPPAHVPVQPSASLLANAPHSSRYDRQNRFYGFPNFSFSGFGTGNSNQMTSSNRGLFSLSSSFSGSKRRQDLQIVPLHNKASLKVLLLHGNLEIWVNEAKNLPNMDMFHKTLGDMLSKLPGKIEGRVSHKITSDPYVSISVANAIIGRTFVISNNENPIWRQHFYVPVAHHAAEVVFFVKDSDVVGSQLIGTVVIPTEQIYSGSIIEGTFPIMQNGKQCKPGAILNVSIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPAGHLPTFMLENGTYYVHGKCWNDIFDAVRQARRLIYVTGWSVWHKVKLVRDTGYGTECTLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVKVILSPRMAGKRHSWVRQREVGTIYTHHQKTVIVDADAGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTVHKDDYHNPTYTGSVAGCPREPWHDLHSKIDGPAAYDVLTNFEERWKRATKPHGLKKLKFEDALLRIERIHDIIGISESYCTNENDPESWHVQIFRSIDSTSVKDFPKEPKDAPSRNLVCGKNMLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNSNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQFFDMQDDIYS 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 721980 728787 - Sed0001664.3 Sed09g0098 724862
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0098 886 Gene3D Endonuclease Chain A 488 725 - -
Sed09g0098 886 Gene3D C2 domain 287 422 IPR035892 -
Sed09g0098 886 MobiDBLite consensus disorder prediction 23 74 - -
Sed09g0098 886 FunFam Phospholipase D delta 488 724 - -
Sed09g0098 886 CDD C2_plant_PLD 286 434 - -
Sed09g0098 886 Pfam C2 domain 292 413 IPR000008 -
Sed09g0098 886 MobiDBLite consensus disorder prediction 158 180 - -
Sed09g0098 886 ProSiteProfiles C2 domain profile. 270 412 IPR000008 -
Sed09g0098 886 MobiDBLite consensus disorder prediction 110 149 - -
Sed09g0098 886 MobiDBLite consensus disorder prediction 107 208 - -
Sed09g0098 886 MobiDBLite consensus disorder prediction 23 72 - -
Sed09g0098 886 Pfam Phospholipase D Active site motif 614 647 IPR001736 GO:0003824(InterPro)
Sed09g0098 886 SMART C2_3c 293 411 IPR000008 -
Sed09g0098 886 SUPERFAMILY Phospholipase D/nuclease 453 713 - -
Sed09g0098 886 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 290 435 IPR035892 -
Sed09g0098 886 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 612 647 IPR001736 GO:0003824(InterPro)
Sed09g0098 886 PANTHER PHOSPHOLIPASE D 289 881 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Sed09g0098 886 SUPERFAMILY Phospholipase D/nuclease 741 872 - -
Sed09g0098 886 Gene3D Endonuclease Chain A 757 873 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0096 Sed-Chr9:718036 Sed09g0098 Sed-Chr9:721980 0.00E+00 dispersed
Sed09g0098 Sed-Chr9:721980 Sed11g1112 Sed-Chr11:26832157 2.70E-186 dispersed
Sed09g0097 Sed-Chr9:718036 Sed09g0098 Sed-Chr9:721980 0.00E+00 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0098 K01115 - csv:101218942 1385.93