Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0101 ATGGGAAGAGGAAGAGTAGAACTAAAGCGAATAGAGAACAAAATCAACCGTCAAGTCACGTTCTCGAAACGCCGAAACGGGCTCCTCAAAAAAGCTTACGAGCTCTCCGTTCTATGCGATGCCGAAGTCGCTTTGATCATCTTCTCCAGCCGAGGCAAGCTCTATGAATTTGGCAGTGCAGGTACGACCACAACCTTGGAGAGGTACCAACGTTGTAGCTTCACTTCTCAAGATAATTGCAGTGAACGAGAAACACAGAATTGGTTCCAGGAAATCTCAAAGTTGAAAGCTAAATATGAATCTCTTTGTCGGACTCATAGGCATTTACTTGGGGAAGATCTTGGACCATTAAGTGTAAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAACAGCCCTTGCTCAAGCTAGACAAAGGAAGAGTCAGATCATGATTGAACAGGTGGAAAATCTACGCAGAAAGGAACGTCAACTTGGGGATCTCAACACAGAGCTTAAGCTCAAGCTTGAGACAGGGGGACAAAACTTTAGAGCCATCCAAGGTTTTTGGAGCTCTAACTCTGCAACTGCTGAACATGGCAACACTTTCCCATTGCATCCTTCACAACCTAGCCCTATCGAATTCCAACACGAACCCGTCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCTGTTCAAAAGAGCATGAATACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA 741 43.99 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTTTLERYQRCSFTSQDNCSERETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLETALAQARQRKSQIMIEQVENLRRKERQLGDLNTELKLKLETGGQNFRAIQGFWSSNSATAEHGNTFPLHPSQPSPIEFQHEPVLQIGYQNYFSEEGPSVQKSMNTCETNFIQGWVI 246
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 753468 759549 + Sed0009092.1 Sed09g0101 724865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0101 246 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed09g0101 246 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 Coils Coil 119 171 - -
Sed09g0101 246 Pfam K-box region 82 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed09g0101 246 CDD MADS_MEF2_like 2 73 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed09g0101 246 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 Gene3D - 13 84 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 FunFam MADS-box transcription factor 1 13 85 - -
Sed09g0101 246 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0101 246 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0090 Sed-Chr7:917278 Sed09g0101 Sed-Chr9:753468 4.40E-54 dispersed
Sed08g2135 Sed-Chr8:35345567 Sed09g0101 Sed-Chr9:753468 9.60E-41 dispersed
Sed08g2426 Sed-Chr8:37342900 Sed09g0101 Sed-Chr9:753468 2.00E-36 dispersed
Sed08g2427 Sed-Chr8:37342900 Sed09g0101 Sed-Chr9:753468 1.10E-36 dispersed
Sed09g0101 Sed-Chr9:753468 Sed09g0382 Sed-Chr9:3457690 8.10E-56 dispersed
Sed13g1603 Sed-Chr13:21213085 Sed09g0101 Sed-Chr9:753468 1.50E-24 dispersed
Sed13g1604 Sed-Chr13:21213085 Sed09g0101 Sed-Chr9:753468 1.20E-23 dispersed
Sed09g0101 Sed-Chr9:753468 Sed09g0102 Sed-Chr9:760950 6.70E-34 tandem
Sed04g2188 Sed-Chr4:35885375 Sed09g0101 Sed-Chr9:753468 1.30E-114 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39495 PF01486 K-box 2.40E-28 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0101 K09264 - csv:101219421 405.986