Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0101 | ATGGGAAGAGGAAGAGTAGAACTAAAGCGAATAGAGAACAAAATCAACCGTCAAGTCACGTTCTCGAAACGCCGAAACGGGCTCCTCAAAAAAGCTTACGAGCTCTCCGTTCTATGCGATGCCGAAGTCGCTTTGATCATCTTCTCCAGCCGAGGCAAGCTCTATGAATTTGGCAGTGCAGGTACGACCACAACCTTGGAGAGGTACCAACGTTGTAGCTTCACTTCTCAAGATAATTGCAGTGAACGAGAAACACAGAATTGGTTCCAGGAAATCTCAAAGTTGAAAGCTAAATATGAATCTCTTTGTCGGACTCATAGGCATTTACTTGGGGAAGATCTTGGACCATTAAGTGTAAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAACAGCCCTTGCTCAAGCTAGACAAAGGAAGAGTCAGATCATGATTGAACAGGTGGAAAATCTACGCAGAAAGGAACGTCAACTTGGGGATCTCAACACAGAGCTTAAGCTCAAGCTTGAGACAGGGGGACAAAACTTTAGAGCCATCCAAGGTTTTTGGAGCTCTAACTCTGCAACTGCTGAACATGGCAACACTTTCCCATTGCATCCTTCACAACCTAGCCCTATCGAATTCCAACACGAACCCGTCTTACAAATCGGGTACCAAAATTATTTCTCAGAAGAGGGGCCATCTGTTCAAAAGAGCATGAATACATGTGAGACAAACTTCATACAAGGATGGGTTATTTGA | 741 | 43.99 | MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTTTLERYQRCSFTSQDNCSERETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLETALAQARQRKSQIMIEQVENLRRKERQLGDLNTELKLKLETGGQNFRAIQGFWSSNSATAEHGNTFPLHPSQPSPIEFQHEPVLQIGYQNYFSEEGPSVQKSMNTCETNFIQGWVI | 246 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 753468 | 759549 | + | Sed0009092.1 | Sed09g0101 | 724865 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0101 | 246 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed09g0101 | 246 | SUPERFAMILY | SRF-like | 2 | 90 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | Coils | Coil | 119 | 171 | - | - | |
Sed09g0101 | 246 | Pfam | K-box region | 82 | 169 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed09g0101 | 246 | CDD | MADS_MEF2_like | 2 | 73 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed09g0101 | 246 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | Gene3D | - | 13 | 84 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | FunFam | MADS-box transcription factor 1 | 13 | 85 | - | - | |
Sed09g0101 | 246 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0101 | 246 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 190 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0090 | Sed-Chr7:917278 | Sed09g0101 | Sed-Chr9:753468 | 4.40E-54 | dispersed | |
Sed08g2135 | Sed-Chr8:35345567 | Sed09g0101 | Sed-Chr9:753468 | 9.60E-41 | dispersed | |
Sed08g2426 | Sed-Chr8:37342900 | Sed09g0101 | Sed-Chr9:753468 | 2.00E-36 | dispersed | |
Sed08g2427 | Sed-Chr8:37342900 | Sed09g0101 | Sed-Chr9:753468 | 1.10E-36 | dispersed | |
Sed09g0101 | Sed-Chr9:753468 | Sed09g0382 | Sed-Chr9:3457690 | 8.10E-56 | dispersed | |
Sed13g1603 | Sed-Chr13:21213085 | Sed09g0101 | Sed-Chr9:753468 | 1.50E-24 | dispersed | |
Sed13g1604 | Sed-Chr13:21213085 | Sed09g0101 | Sed-Chr9:753468 | 1.20E-23 | dispersed | |
Sed09g0101 | Sed-Chr9:753468 | Sed09g0102 | Sed-Chr9:760950 | 6.70E-34 | tandem | |
Sed04g2188 | Sed-Chr4:35885375 | Sed09g0101 | Sed-Chr9:753468 | 1.30E-114 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39495 | PF01486 | K-box | 2.40E-28 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0101 | K09264 | - | csv:101219421 | 405.986 |