Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0102 ATGGTTAGGGGAAAAACTCAGATGAGGTTAATAGAAAATGCTACAAGCAGGCAAGTTACTTTTTCAAAGAGGAAAAATGGGCTATTGAAAAAGGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCTAATTCAAGCATTCAGGCATCTATTGAGCGTTACCGAAAGCATGCAAAATCCAAAGAACCCCATGATCATCCATCTGTTGATAATATTCAGTTGGAGCATCTGAATCATGCAGAAGCAGAAAGTCTGTTGAAGAAAATAGAGCAACTTGAAGTTTCAAAGCGGAAAATGTTGGGAGAAGATTTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGTAAAATTAGAGCCAGAAAGGTAGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCAAAAGGAGAAAGACTTGGAAGATGAAAATGCTAAGCTACATGAAAAGTGGGAAGGTGAGGCAGAAAGAGGAGTAAAGGAAGTGGAAAGTAGCAGCCCAATTTCAGAAGTGGAAACAGAGCTGTTTATTGGGCCACCTGAAACAAGGCCCAAAAGATATCTTGACCTTAACTGA 645 38.91 MVRGKTQMRLIENATSRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFANSSIQASIERYRKHAKSKEPHDHPSVDNIQLEHLNHAEAESLLKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKVEVFEEQIKQLKQKEKDLEDENAKLHEKWEGEAERGVKEVESSSPISEVETELFIGPPETRPKRYLDLN 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 760950 777422 - Sed0003074.1 Sed09g0102 724866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0102 214 Gene3D - 14 91 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Sed09g0102 214 FunFam Agamous-like MADS-box protein AGL13 13 77 - -
Sed09g0102 214 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 183 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Sed09g0102 214 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 MobiDBLite consensus disorder prediction 164 194 - -
Sed09g0102 214 Coils Coil 127 173 - -
Sed09g0102 214 Coils Coil 97 117 - -
Sed09g0102 214 CDD MADS_MEF2_like 3 75 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Sed09g0102 214 SUPERFAMILY SRF-like 3 89 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Sed09g0102 214 MobiDBLite consensus disorder prediction 164 186 - -
Sed09g0102 214 Pfam K-box region 93 174 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed05g0850 Sed-Chr5:6774610 Sed09g0102 Sed-Chr9:760950 6.00E-47 dispersed
Sed09g0102 Sed-Chr9:760950 Sed12g0222 Sed-Chr12:1232327 3.50E-55 dispersed
Sed10g2119 Sed-Chr10:37656154 Sed09g0102 Sed-Chr9:760950 9.80E-31 dispersed
Sed09g0101 Sed-Chr9:753468 Sed09g0102 Sed-Chr9:760950 6.70E-34 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39496 PF01486 K-box 7.90E-26 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0102 - - - 0.0