Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0102 | ATGGTTAGGGGAAAAACTCAGATGAGGTTAATAGAAAATGCTACAAGCAGGCAAGTTACTTTTTCAAAGAGGAAAAATGGGCTATTGAAAAAGGCTTTTGAGCTATCAGTTCTCTGTGATGCTGAGGTTGCTCTTATCATCTTCTCTCCAAGAGGAAAGCTTTATGAATTTGCTAATTCAAGCATTCAGGCATCTATTGAGCGTTACCGAAAGCATGCAAAATCCAAAGAACCCCATGATCATCCATCTGTTGATAATATTCAGTTGGAGCATCTGAATCATGCAGAAGCAGAAAGTCTGTTGAAGAAAATAGAGCAACTTGAAGTTTCAAAGCGGAAAATGTTGGGAGAAGATTTGGGATCTTGCTCCATGGATGAACTTCAACAACTTGAAAATCAGTTGGAGAAAAGTGTTTGTAAAATTAGAGCCAGAAAGGTAGAAGTGTTTGAAGAACAGATTAAACAACTAAAGCAAAAGGAGAAAGACTTGGAAGATGAAAATGCTAAGCTACATGAAAAGTGGGAAGGTGAGGCAGAAAGAGGAGTAAAGGAAGTGGAAAGTAGCAGCCCAATTTCAGAAGTGGAAACAGAGCTGTTTATTGGGCCACCTGAAACAAGGCCCAAAAGATATCTTGACCTTAACTGA | 645 | 38.91 | MVRGKTQMRLIENATSRQVTFSKRKNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFANSSIQASIERYRKHAKSKEPHDHPSVDNIQLEHLNHAEAESLLKKIEQLEVSKRKMLGEDLGSCSMDELQQLENQLEKSVCKIRARKVEVFEEQIKQLKQKEKDLEDENAKLHEKWEGEAERGVKEVESSSPISEVETELFIGPPETRPKRYLDLN | 214 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 760950 | 777422 | - | Sed0003074.1 | Sed09g0102 | 724866 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0102 | 214 | Gene3D | - | 14 | 91 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | ProSiteProfiles | K-box domain profile. | 90 | 180 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Sed09g0102 | 214 | FunFam | Agamous-like MADS-box protein AGL13 | 13 | 77 | - | - | |
Sed09g0102 | 214 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 183 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Sed09g0102 | 214 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | MobiDBLite | consensus disorder prediction | 164 | 194 | - | - | |
Sed09g0102 | 214 | Coils | Coil | 127 | 173 | - | - | |
Sed09g0102 | 214 | Coils | Coil | 97 | 117 | - | - | |
Sed09g0102 | 214 | CDD | MADS_MEF2_like | 3 | 75 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Sed09g0102 | 214 | SUPERFAMILY | SRF-like | 3 | 89 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Sed09g0102 | 214 | MobiDBLite | consensus disorder prediction | 164 | 186 | - | - | |
Sed09g0102 | 214 | Pfam | K-box region | 93 | 174 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed05g0850 | Sed-Chr5:6774610 | Sed09g0102 | Sed-Chr9:760950 | 6.00E-47 | dispersed | |
Sed09g0102 | Sed-Chr9:760950 | Sed12g0222 | Sed-Chr12:1232327 | 3.50E-55 | dispersed | |
Sed10g2119 | Sed-Chr10:37656154 | Sed09g0102 | Sed-Chr9:760950 | 9.80E-31 | dispersed | |
Sed09g0101 | Sed-Chr9:753468 | Sed09g0102 | Sed-Chr9:760950 | 6.70E-34 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39496 | PF01486 | K-box | 7.90E-26 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0102 | - | - | - | 0.0 |