Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0109 ATGAGTGCCAACCCTAGTACTAGCGGTGGCGGCGGTGGCGGTGGTGGTGTCGGAGTAGGGCCTTGTGGGGCCTGCAAGTTTTTGAGGAGAAAGTGTGTTCCTGGCTGCATATTTGCTCCTTATTTCGACTCGGAGCAAGGCGCCGCCCACTTCGCCGCGGTGCACAAGGTGTTCGGGGCCAGCAACGTCTCGAAACTCCTCAATCACATTCCCGTCCCCAAGCGCCTCGACGCTGTCGTCACGATTTGCTACGAGGCTCAGACTCGCCTCCGAGACCCCGTCTACGGTTGCGTCGCTCATATCTTCGCTCTTCAACAACAGGTTGTGAGTTTACAAGCCGAGCTCTCCTACCTTCAATCTCATCTAGCAACATTGGAGCTGCCATCGCCGCCGCATCCGCCGCCGCCTCCAAATTTTTCGGCACCGCCACCGCTCTCCATCTCCGACTTGCCGTCGGCCTCCTCTCTTCCGGCGACATATGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCAGCATGGGCCATGCAACACCAGCCGCGACTCGATCACCACCGCCCGTTTGCGGGCGGTGGCTCGTCCACGGCTGCTGGAGAGGGCGACCTACAATCCTTGGCCCGTGAGCTCCTCCATAGACACGGCGGACCGCCGTGCTCTGACGTTTCGTCGCCGCCGTCGCTCTCTAAATGA 690 60.29 MSANPSTSGGGGGGGGVGVGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLNHIPVPKRLDAVVTICYEAQTRLRDPVYGCVAHIFALQQQVVSLQAELSYLQSHLATLELPSPPHPPPPPNFSAPPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQHQPRLDHHRPFAGGGSSTAAGEGDLQSLARELLHRHGGPPCSDVSSPPSLSK 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 822546 826253 - Sed0016554.1 Sed09g0109 724873
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0109 229 PANTHER LOB DOMAIN CONTAINING PROTEIN 18 139 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed09g0109 229 MobiDBLite consensus disorder prediction 183 229 - -
Sed09g0109 229 MobiDBLite consensus disorder prediction 127 144 - -
Sed09g0109 229 ProSiteProfiles LOB domain profile. 20 122 IPR004883 -
Sed09g0109 229 MobiDBLite consensus disorder prediction 126 147 - -
Sed09g0109 229 Pfam Lateral organ boundaries (LOB) domain 21 119 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0841 Sed-Chr2:46022558 Sed09g0109 Sed-Chr9:822546 5.10E-39 dispersed
Sed05g0100 Sed-Chr5:580011 Sed09g0109 Sed-Chr9:822546 1.10E-37 dispersed
Sed07g0525 Sed-Chr7:3946096 Sed09g0109 Sed-Chr9:822546 1.20E-37 dispersed
Sed07g2503 Sed-Chr7:40762582 Sed09g0109 Sed-Chr9:822546 4.00E-32 dispersed
Sed09g0109 Sed-Chr9:822546 Sed12g2463 Sed-Chr12:34257423 6.00E-29 dispersed
Sed09g0109 Sed-Chr9:822546 Sed09g0110 Sed-Chr9:856195 1.60E-45 tandem
Sed02g1589 Sed-Chr2:51458567 Sed09g0109 Sed-Chr9:822546 3.80E-52 wgd
Sed04g2174 Sed-Chr4:35791561 Sed09g0109 Sed-Chr9:822546 3.10E-80 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39497 PF03195 LOB 2.10E-38 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0109 K21994 - csv:101220603 348.977