Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0109 | ATGAGTGCCAACCCTAGTACTAGCGGTGGCGGCGGTGGCGGTGGTGGTGTCGGAGTAGGGCCTTGTGGGGCCTGCAAGTTTTTGAGGAGAAAGTGTGTTCCTGGCTGCATATTTGCTCCTTATTTCGACTCGGAGCAAGGCGCCGCCCACTTCGCCGCGGTGCACAAGGTGTTCGGGGCCAGCAACGTCTCGAAACTCCTCAATCACATTCCCGTCCCCAAGCGCCTCGACGCTGTCGTCACGATTTGCTACGAGGCTCAGACTCGCCTCCGAGACCCCGTCTACGGTTGCGTCGCTCATATCTTCGCTCTTCAACAACAGGTTGTGAGTTTACAAGCCGAGCTCTCCTACCTTCAATCTCATCTAGCAACATTGGAGCTGCCATCGCCGCCGCATCCGCCGCCGCCTCCAAATTTTTCGGCACCGCCACCGCTCTCCATCTCCGACTTGCCGTCGGCCTCCTCTCTTCCGGCGACATATGACTTGTCGTCCCTCTTTGACCCAATGGCTCAGCCAGCATGGGCCATGCAACACCAGCCGCGACTCGATCACCACCGCCCGTTTGCGGGCGGTGGCTCGTCCACGGCTGCTGGAGAGGGCGACCTACAATCCTTGGCCCGTGAGCTCCTCCATAGACACGGCGGACCGCCGTGCTCTGACGTTTCGTCGCCGCCGTCGCTCTCTAAATGA | 690 | 60.29 | MSANPSTSGGGGGGGGVGVGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLNHIPVPKRLDAVVTICYEAQTRLRDPVYGCVAHIFALQQQVVSLQAELSYLQSHLATLELPSPPHPPPPPNFSAPPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQHQPRLDHHRPFAGGGSSTAAGEGDLQSLARELLHRHGGPPCSDVSSPPSLSK | 229 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 822546 | 826253 | - | Sed0016554.1 | Sed09g0109 | 724873 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0109 | 229 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 18 | 139 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Sed09g0109 | 229 | MobiDBLite | consensus disorder prediction | 183 | 229 | - | - | |
Sed09g0109 | 229 | MobiDBLite | consensus disorder prediction | 127 | 144 | - | - | |
Sed09g0109 | 229 | ProSiteProfiles | LOB domain profile. | 20 | 122 | IPR004883 | - | |
Sed09g0109 | 229 | MobiDBLite | consensus disorder prediction | 126 | 147 | - | - | |
Sed09g0109 | 229 | Pfam | Lateral organ boundaries (LOB) domain | 21 | 119 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed02g0841 | Sed-Chr2:46022558 | Sed09g0109 | Sed-Chr9:822546 | 5.10E-39 | dispersed | |
Sed05g0100 | Sed-Chr5:580011 | Sed09g0109 | Sed-Chr9:822546 | 1.10E-37 | dispersed | |
Sed07g0525 | Sed-Chr7:3946096 | Sed09g0109 | Sed-Chr9:822546 | 1.20E-37 | dispersed | |
Sed07g2503 | Sed-Chr7:40762582 | Sed09g0109 | Sed-Chr9:822546 | 4.00E-32 | dispersed | |
Sed09g0109 | Sed-Chr9:822546 | Sed12g2463 | Sed-Chr12:34257423 | 6.00E-29 | dispersed | |
Sed09g0109 | Sed-Chr9:822546 | Sed09g0110 | Sed-Chr9:856195 | 1.60E-45 | tandem | |
Sed02g1589 | Sed-Chr2:51458567 | Sed09g0109 | Sed-Chr9:822546 | 3.80E-52 | wgd | |
Sed04g2174 | Sed-Chr4:35791561 | Sed09g0109 | Sed-Chr9:822546 | 3.10E-80 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39497 | PF03195 | LOB | 2.10E-38 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0109 | K21994 | - | csv:101220603 | 348.977 |