Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0110 | ATGATGCGTCGTGGCGGCGGCGGTGGCGGTGGCGATGGTCATAGACCGTGCGGCGCGTGCAAGTTTTTGAGAAGAAAGTGTGTGAAAGGATGCATTTTTGCACCGTATTTCGACTCGGCTCAAGGCGCTGCCCACTTCGCAGCCGTGCACAAGGTTTTTGGTGCTAGCAATGCCTCCAAGCTTCTCCAAGGCATCCCGCCCGCCAAGCGCCTCGACGCTTGCGTTACTCTTTGTTTTGAGGCTCTCGCTAGGGTTCGAGATCCCGTCTATGGTTGCGTTTCTCATATTTTCTCCCTTCAACAACAGGTAGCTAATTTGCAAGGAGAACTAGCATACATTCAAGCCAAAATTTCAACCTTGCAGCGGATACATCCACCTCCGTTGCACAGCCCGACTCCAAACACTCGCCACCCTCCGCTCCAAGACTCGATACCATGCCCCGATATGGGCTTGGTTTCGAGTGATCCAATCCTGCTTGACCCATTCCAAATGCAGCCAGTTTGTAATGAAACGTCGAGCAGCTTTATGGACCCAATTGATCAGTTAGAAATGGATGAAGATCAAGATCTTCAATCTTTGGCTCAAGAGTTCGTCTCGAGGTATTTTCCCGGGGTACGATTCTGGCCGCCGTGCTCTTAG | 639 | 51.8 | MMRRGGGGGGGDGHRPCGACKFLRRKCVKGCIFAPYFDSAQGAAHFAAVHKVFGASNASKLLQGIPPAKRLDACVTLCFEALARVRDPVYGCVSHIFSLQQQVANLQGELAYIQAKISTLQRIHPPPLHSPTPNTRHPPLQDSIPCPDMGLVSSDPILLDPFQMQPVCNETSSSFMDPIDQLEMDEDQDLQSLAQEFVSRYFPGVRFWPPCS | 212 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 856195 | 860104 | + | Sed0002346.1 | Sed09g0110 | 724874 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0110 | 212 | ProSiteProfiles | LOB domain profile. | 15 | 117 | IPR004883 | - | |
Sed09g0110 | 212 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 13 | 135 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) | |
Sed09g0110 | 212 | Pfam | Lateral organ boundaries (LOB) domain | 16 | 114 | IPR004883 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2174 | Sed-Chr4:35791561 | Sed09g0110 | Sed-Chr9:856195 | 2.10E-44 | dispersed | |
Sed09g0110 | Sed-Chr9:856195 | Sed12g2463 | Sed-Chr12:34257423 | 9.80E-26 | dispersed | |
Sed09g0109 | Sed-Chr9:822546 | Sed09g0110 | Sed-Chr9:856195 | 1.60E-45 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
39498 | PF03195 | LOB | 3.50E-36 | No_clan | Sed | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0110 | - | - | - | 0.0 |