Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0110 ATGATGCGTCGTGGCGGCGGCGGTGGCGGTGGCGATGGTCATAGACCGTGCGGCGCGTGCAAGTTTTTGAGAAGAAAGTGTGTGAAAGGATGCATTTTTGCACCGTATTTCGACTCGGCTCAAGGCGCTGCCCACTTCGCAGCCGTGCACAAGGTTTTTGGTGCTAGCAATGCCTCCAAGCTTCTCCAAGGCATCCCGCCCGCCAAGCGCCTCGACGCTTGCGTTACTCTTTGTTTTGAGGCTCTCGCTAGGGTTCGAGATCCCGTCTATGGTTGCGTTTCTCATATTTTCTCCCTTCAACAACAGGTAGCTAATTTGCAAGGAGAACTAGCATACATTCAAGCCAAAATTTCAACCTTGCAGCGGATACATCCACCTCCGTTGCACAGCCCGACTCCAAACACTCGCCACCCTCCGCTCCAAGACTCGATACCATGCCCCGATATGGGCTTGGTTTCGAGTGATCCAATCCTGCTTGACCCATTCCAAATGCAGCCAGTTTGTAATGAAACGTCGAGCAGCTTTATGGACCCAATTGATCAGTTAGAAATGGATGAAGATCAAGATCTTCAATCTTTGGCTCAAGAGTTCGTCTCGAGGTATTTTCCCGGGGTACGATTCTGGCCGCCGTGCTCTTAG 639 51.8 MMRRGGGGGGGDGHRPCGACKFLRRKCVKGCIFAPYFDSAQGAAHFAAVHKVFGASNASKLLQGIPPAKRLDACVTLCFEALARVRDPVYGCVSHIFSLQQQVANLQGELAYIQAKISTLQRIHPPPLHSPTPNTRHPPLQDSIPCPDMGLVSSDPILLDPFQMQPVCNETSSSFMDPIDQLEMDEDQDLQSLAQEFVSRYFPGVRFWPPCS 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 856195 860104 + Sed0002346.1 Sed09g0110 724874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0110 212 ProSiteProfiles LOB domain profile. 15 117 IPR004883 -
Sed09g0110 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 13 135 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
Sed09g0110 212 Pfam Lateral organ boundaries (LOB) domain 16 114 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2174 Sed-Chr4:35791561 Sed09g0110 Sed-Chr9:856195 2.10E-44 dispersed
Sed09g0110 Sed-Chr9:856195 Sed12g2463 Sed-Chr12:34257423 9.80E-26 dispersed
Sed09g0109 Sed-Chr9:822546 Sed09g0110 Sed-Chr9:856195 1.60E-45 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39498 PF03195 LOB 3.50E-36 No_clan Sed TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0110 - - - 0.0