Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0119 ATGGATGGACCAACTGGTCGTGGTGGCGGCGTGGATATGAATTTACCGAACTATAAGCTTGGAAAAACCCTTGGCATTGGCTCATTTGGAAAAGTGAAAATTGCAGAGCATGCTTTGACTGGTCATAAAGTTGCTATTAAGATACTTAACCGCCGGAAGATAAGAAACTTGGACATGGAAGAAAAAGTAAGGAGAGAGATTAAAATATTGAGATTGTTCATGCATCCGCACATTATACGGCTCTATGAAGTTATAGAGACTCCAGCAGACATTTATGTCGTGATGGAGTATGTAAAATCTGGAGAGCTATTTGATTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCGCGTAATTTTTTCCAACAGATAATTTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTGCATAGAGATCTTAAGCCTGAGAATTTGCTTTTGGACTCCAAATGTAATGTCAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGCGATGGTCACTTTCTAAAGACAAGTTGTGGGAGTCCTAATTATGCTGCCCCAGAGGTAATCTCTGGGAAATTATATGCTGGACCAGAAGTAGATGTATGGAGTTGTGGTGTTATTTTGTATGCTCTTCTATGTGGCACTCTTCCTTTCGACGATGAAAACATTCCCAACTTGTTTAAGAAAATAAAGGGTGGGATCTATACTCTTCCAAGTCACTTATCATCAGGTGCTAGAGAGCTGATTCCTAGTATGCTGGTTGTTGACCCAATGAAGCGAATCACAATCCCTGAGATTCGACAACACCCATGGTTTCAGGCTCATCTTCCACGCTATTTAGCTGTGCCTCCACCCGATACAATGCAACAAGCAAAAAAGATGGATGAAGATATTCTTCAGGAGGTTATAAAGATGGGATTTGACAGGAATCAGCTTGTGGAGTCTCTTCGTAACCGAATTCAAAATGAGGCTACAGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAATTTCAGGAGACTATGGAAACAGGATTCAACCGTATGCATCCTGGTGATCCTGCAAGCCCTGCTGTAGGACACCGTCTTCCTGGATATATGGATTATCAAGGAATGGGCTTAAGATCACAGTTTCCGGTTGAGCGAAAGTGGGCTTTGGGATTACAGTCCCGAGCTCATCCCCGTGAAATTATGACCGAAGTCCTTAAAGCTCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTACAACATGAAATGTAGGTGGTTACCTGGACCTCCAGGCCATCATGAAGGCATGATTAAGAATCCTGTGCATAGTAATCATTACTTTGGGGACGAGTCGTCTACCATCATCGAAAATGATGGCGTTGTGAAATCGCCGAATGTTATCAAGTTTGAAGTTCAGCTCTACAAAACACGCGAAGAGAAGTATTTGCTTGATCTGCAGAGGGTTCAAGGCCCTCAGTTCCTCTTCCTGGATCTTTGTGCTGCCTTCCTTGCACAGCTCAGAGTCCTCTAA 1548 42.96 MDGPTGRGGGVDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIRNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPADIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKMDEDILQEVIKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGDPASPAVGHRLPGYMDYQGMGLRSQFPVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGPPGHHEGMIKNPVHSNHYFGDESSTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 515
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 918470 927821 - Sed0018345.1 Sed09g0119 724883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0119 515 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 291 331 IPR015940 -
Sed09g0119 515 Pfam Kinase associated domain 1 472 514 IPR001772 -
Sed09g0119 515 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 17 294 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Sed09g0119 515 SUPERFAMILY KA1-like 327 514 IPR028375 -
Sed09g0119 515 SUPERFAMILY Protein kinase-like (PK-like) 15 288 IPR011009 -
Sed09g0119 515 Gene3D Transferase(Phosphotransferase) domain 1 11 348 - -
Sed09g0119 515 FunFam Non-specific serine/threonine protein kinase 394 513 - -
Sed09g0119 515 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 466 514 IPR001772 -
Sed09g0119 515 Pfam Protein kinase domain 18 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0119 515 ProSiteProfiles Protein kinase domain profile. 18 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0119 515 FunFam Non-specific serine/threonine protein kinase 9 97 - -
Sed09g0119 515 CDD AMPKA_C 388 512 - -
Sed09g0119 515 Gene3D Kinase associated domain 1, KA1 394 513 - -
Sed09g0119 515 CDD STKc_AMPK_alpha 15 270 - -
Sed09g0119 515 Pfam UBA/TS-N domain 293 328 IPR015940 -
Sed09g0119 515 ProSitePatterns Serine/Threonine protein kinases active-site signature. 137 149 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0119 515 FunFam Non-specific serine/threonine protein kinase 9 348 - -
Sed09g0119 515 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Sed09g0119 515 CDD UBA_SnRK1_plant 293 332 - -
Sed09g0119 515 SMART serkin_6 18 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0119 515 SMART uba_6 293 330 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2164 Sed-Chr4:35708065 Sed09g0119 Sed-Chr9:918470 6.30E-197 dispersed
Sed06g0645 Sed-Chr6:6098504 Sed09g0119 Sed-Chr9:918470 1.70E-174 dispersed
Sed06g0646 Sed-Chr6:6098504 Sed09g0119 Sed-Chr9:918470 2.00E-175 dispersed
Sed09g0119 Sed-Chr9:918470 Sed12g0058 Sed-Chr12:321760 3.80E-71 dispersed
Sed14g1020 Sed-Chr14:19798744 Sed09g0119 Sed-Chr9:918470 9.60E-55 dispersed
Sed09g0119 Sed-Chr9:918470 Sed09g0120 Sed-Chr9:918470 2.00E-306 tandem
Sed04g2163 Sed-Chr4:35708065 Sed09g0119 Sed-Chr9:918470 8.10E-292 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79739 PF00069 Pkinase 4.10E-80 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0119 K07198 - csv:101211720 998.423