Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0178 ATGGCGGGCCTGTCGCTCAAGTGTGGGGATTGTGGCGCACTCTTGAGATCCGTCGAAGAAGCTCAAGAACACGCCGAACTCACTTCGCATTCCAACTTCTCTGAATCCACTGAGGCTGTGCTCAATCTCATCTGCACCACTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCACATTGAGTTTGCAGATAAGACTTTGGAGGCTGCAAAACCCATAAGCTTGGAGGCACCGAAGGTTGCTATGGAATCAGAAGATGGTGGGGATGCAAGTGGTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAAAATATATTAGAGGAACTCGAAGCTATGGGCTTCCCAGCAGCACGAGCAACTCGTGCACTTTATTACTCTGGTAATTCCAGTCTTGAGGCTGCAGTCAATTGGGTAGTTGAACACGAGAATGATCCGGAGATAGATCAGATGCCCTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCTAAGCCTTCTCTTACACCCGAGGAACTGAAAGCCAAACAGCAGGAGCTAAGGGAACGAGCTCGGAAGAAAAAAGAGGAGGAGGAGAAGAAAACAGAGAGAGAAAAGGAAAAGGAGAGAATTCGAATCGGCAAGGAACTCCTAGAAGCAAAAAGAATCGAGGAACAAAATGAGAGAAAAAGAATATTAGCCTTGAGGAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAAGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCAGCAGAAGATCCTTCAACTGCAAAACCTCCAGCACCTGTCGTTGAAGAGAAAAAGATCTCATTGCCGATTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCCTTTCAAACCCTTCTAACTTATGTCGGAAACGTGGCGAAAAATCCGGATGAAGAGAAGTTCAGGAAGATCAGACTTAGCAACCAAACGTTCCAGGATAGAGTGGGTTCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGTGGTGAGTTCTTGTTTCTGCCCAGAGACAAGGTTGACAGGGCAGTCCTCAATTTATCTGGCTCTGAGTTGGACTCTGCAATAAATAATCCCTTTTTTGGTGTTCTTTAA 1236 45.71 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLICTTCGKPCRSKTESDLHTKRTGHIEFADKTLEAAKPISLEAPKVAMESEDGGDASGSKSEEMVVPEVNKNILEELEAMGFPAARATRALYYSGNSSLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEELKAKQQELRERARKKKEEEEKKTEREKEKERIRIGKELLEAKRIEEQNERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPAEDPSTAKPPAPVVEEKKISLPIRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNQTFQDRVGSLRGGIEFLELCGFEKIEGGEFLFLPRDKVDRAVLNLSGSELDSAINNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1427752 1438811 - Sed0019212.1 Sed09g0178 724942
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0178 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Sed09g0178 411 MobiDBLite consensus disorder prediction 253 270 - -
Sed09g0178 411 MobiDBLite consensus disorder prediction 253 280 - -
Sed09g0178 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Sed09g0178 411 Coils Coil 181 213 - -
Sed09g0178 411 MobiDBLite consensus disorder prediction 172 210 - -
Sed09g0178 411 Gene3D - 113 157 - -
Sed09g0178 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515(InterPro)
Sed09g0178 411 CDD UBA_PUB_plant 110 158 - -
Sed09g0178 411 CDD PUB_UBA_plant 305 411 - -
Sed09g0178 411 Gene3D - 303 398 - -
Sed09g0178 411 SMART uba_6 112 150 IPR015940 -
Sed09g0178 411 Pfam UBA-like domain 112 159 IPR015940 -
Sed09g0178 411 Coils Coil 224 261 - -
Sed09g0178 411 Pfam PUB domain 318 389 IPR018997 -
Sed09g0178 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
Sed09g0178 411 SMART PGNneu 321 384 - -
Sed09g0178 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Sed09g0178 411 MobiDBLite consensus disorder prediction 156 210 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0178 Sed-Chr9:1427752 Sed11g0517 Sed-Chr11:5076812 3.20E-65 dispersed
Sed09g0178 Sed-Chr9:1427752 Sed11g0515 Sed-Chr11:5076586 3.20E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0178 K24348 - csv:101215434 698.353