Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0178 | ATGGCGGGCCTGTCGCTCAAGTGTGGGGATTGTGGCGCACTCTTGAGATCCGTCGAAGAAGCTCAAGAACACGCCGAACTCACTTCGCATTCCAACTTCTCTGAATCCACTGAGGCTGTGCTCAATCTCATCTGCACCACTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAAAGGACTGGCCACATTGAGTTTGCAGATAAGACTTTGGAGGCTGCAAAACCCATAAGCTTGGAGGCACCGAAGGTTGCTATGGAATCAGAAGATGGTGGGGATGCAAGTGGTAGCAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAAAATATATTAGAGGAACTCGAAGCTATGGGCTTCCCAGCAGCACGAGCAACTCGTGCACTTTATTACTCTGGTAATTCCAGTCTTGAGGCTGCAGTCAATTGGGTAGTTGAACACGAGAATGATCCGGAGATAGATCAGATGCCCTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCTAAGCCTTCTCTTACACCCGAGGAACTGAAAGCCAAACAGCAGGAGCTAAGGGAACGAGCTCGGAAGAAAAAAGAGGAGGAGGAGAAGAAAACAGAGAGAGAAAAGGAAAAGGAGAGAATTCGAATCGGCAAGGAACTCCTAGAAGCAAAAAGAATCGAGGAACAAAATGAGAGAAAAAGAATATTAGCCTTGAGGAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAAGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCAGCAGAAGATCCTTCAACTGCAAAACCTCCAGCACCTGTCGTTGAAGAGAAAAAGATCTCATTGCCGATTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGTTTGCGATCATTAAAGTCCAATCACAAGGAGGATGATGCTAAAGTGAAGAGAGCCTTTCAAACCCTTCTAACTTATGTCGGAAACGTGGCGAAAAATCCGGATGAAGAGAAGTTCAGGAAGATCAGACTTAGCAACCAAACGTTCCAGGATAGAGTGGGTTCACTGAGAGGAGGAATTGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGTGGTGAGTTCTTGTTTCTGCCCAGAGACAAGGTTGACAGGGCAGTCCTCAATTTATCTGGCTCTGAGTTGGACTCTGCAATAAATAATCCCTTTTTTGGTGTTCTTTAA | 1236 | 45.71 | MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLICTTCGKPCRSKTESDLHTKRTGHIEFADKTLEAAKPISLEAPKVAMESEDGGDASGSKSEEMVVPEVNKNILEELEAMGFPAARATRALYYSGNSSLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTPEELKAKQQELRERARKKKEEEEKKTEREKEKERIRIGKELLEAKRIEEQNERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPAEDPSTAKPPAPVVEEKKISLPIRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNQTFQDRVGSLRGGIEFLELCGFEKIEGGEFLFLPRDKVDRAVLNLSGSELDSAINNPFFGVL | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1427752 | 1438811 | - | Sed0019212.1 | Sed09g0178 | 724942 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0178 | 411 | PANTHER | F13M7.16 PROTEIN | 1 | 411 | - | - | |
Sed09g0178 | 411 | MobiDBLite | consensus disorder prediction | 253 | 270 | - | - | |
Sed09g0178 | 411 | MobiDBLite | consensus disorder prediction | 253 | 280 | - | - | |
Sed09g0178 | 411 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 8 | 30 | IPR013087 | - | |
Sed09g0178 | 411 | Coils | Coil | 181 | 213 | - | - | |
Sed09g0178 | 411 | MobiDBLite | consensus disorder prediction | 172 | 210 | - | - | |
Sed09g0178 | 411 | Gene3D | - | 113 | 157 | - | - | |
Sed09g0178 | 411 | SUPERFAMILY | UBA-like | 97 | 164 | IPR009060 | GO:0005515(InterPro) | |
Sed09g0178 | 411 | CDD | UBA_PUB_plant | 110 | 158 | - | - | |
Sed09g0178 | 411 | CDD | PUB_UBA_plant | 305 | 411 | - | - | |
Sed09g0178 | 411 | Gene3D | - | 303 | 398 | - | - | |
Sed09g0178 | 411 | SMART | uba_6 | 112 | 150 | IPR015940 | - | |
Sed09g0178 | 411 | Pfam | UBA-like domain | 112 | 159 | IPR015940 | - | |
Sed09g0178 | 411 | Coils | Coil | 224 | 261 | - | - | |
Sed09g0178 | 411 | Pfam | PUB domain | 318 | 389 | IPR018997 | - | |
Sed09g0178 | 411 | ProSiteProfiles | Ubiquitin-associated domain (UBA) profile. | 110 | 151 | IPR015940 | - | |
Sed09g0178 | 411 | SMART | PGNneu | 321 | 384 | - | - | |
Sed09g0178 | 411 | SUPERFAMILY | PUG domain-like | 297 | 407 | IPR036339 | - | |
Sed09g0178 | 411 | MobiDBLite | consensus disorder prediction | 156 | 210 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed09g0178 | Sed-Chr9:1427752 | Sed11g0517 | Sed-Chr11:5076812 | 3.20E-65 | dispersed | |
Sed09g0178 | Sed-Chr9:1427752 | Sed11g0515 | Sed-Chr11:5076586 | 3.20E-65 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0178 | K24348 | - | csv:101215434 | 698.353 |