Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0179 | ATGGGTAAGGAAAAGATTCACATCAGCATTGTTGTTATCGGCCATGTCGACTCAGGAAAGTCGACCACCACTGGTCACCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATTGAGAGATTTGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTACGCTTGGGTTCTTGACAAGCTTAAGGCAGAGCGTGAACGTGGTATCACCATTGACATTGCTCTCTGGAAGTTTGAGACAACCAAGTACTACTGCACGGTCATTGATGCTCCTGGACATCGTGACTTTATCAAGAACATGATTACCGGAACGTCACAGGCTGACTGTGCTGTTCTCATTATTGATTCCACCACTGGTGGTTTCGAAGCTGGTATTTCCAAGGATGGACAGACCCGTGAACACGCCCTCCTTGCATTCACCCTTGGTGTCAAGCAAATGATTTGCTGCTGTAACAAGATGGATGCCACCACTCCTAAATACTCCAAGGCAAGGTATGATGAAATTGTGAAGGAGGTCTCGTCCTACCTCAAGAAGGTTGGATACAACCCTGAAAAAATTGCTTTCGTTCCGATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACCAGATCTCTGAGCCCAAGAGGCCCTCGGACAAGCCCCTCCGTCTCCCACTCCAGGATGTTTACAAGATTGGTGGTATTGGAACTGTGCCAGTCGGTCGTGTTGAAACTGGTGTCCTCAAGCCTGGTATGGTCGTCACTTTTGGACCAACTGGACTGACCACTGAGGTTAAGTCCGTTGAAATGCACCACGAGTCTCTCCCCGAGGCCTTGCCCGGTGACAATGTCGGTTTCAATGTTAAGAATGTTTCAGTCAAGGATATCAAGCGTGGTTTTGTTGCTTCCAACTCGAAGGATGATCCTGCCAAGGAGGCTTCTAGCTTTGTTTCTCAGGTTATCATCATGAACCACCCTGGCCAGATTGGTAATGGTTACGCCCCGGTCCTTGATTGCCACACCTCCCACATTGCTGTTAAGTTCTCTGAGATCCAAACCAAGATCGATCGTCGGTCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTTTTGAAGAATGGTGATGCTGGTATGGTTAAGATGGTTCCCACCAAGCCCATGGTTGTCGAAACCTTCTCCCAGTACCCACCATTGGGTCGTTTTGCGGTTCGTGACATGCGTCAAACTGTTGCTGTCGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCGACCGGAGCCAAGGTGACCAAGTCTGCTGTCAAGAAGAAGTAA | 1344 | 48.81 | MGKEKIHISIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIAFVPISGFEGDNMIERSTNLDWYKGPTLLEALDQISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVSVKDIKRGFVASNSKDDPAKEASSFVSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFSEIQTKIDRRSGKELEKEPKFLKNGDAGMVKMVPTKPMVVETFSQYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK | 447 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1445372 | 1448286 | + | Sed0019843.1 | Sed09g0179 | 724943 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0179 | 447 | NCBIfam | translation elongation factor EF-1 subunit alpha | 1 | 433 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
Sed09g0179 | 447 | SUPERFAMILY | Translation proteins | 231 | 321 | IPR009000 | - | |
Sed09g0179 | 447 | Pfam | Elongation factor Tu GTP binding domain | 6 | 223 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed09g0179 | 447 | CDD | EF1_alpha | 9 | 227 | - | - | |
Sed09g0179 | 447 | Gene3D | - | 1 | 226 | IPR027417 | - | |
Sed09g0179 | 447 | Gene3D | Translation factors | 323 | 430 | - | - | |
Sed09g0179 | 447 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed09g0179 | 447 | PRINTS | GTP-binding elongation factor signature | 148 | 157 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed09g0179 | 447 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed09g0179 | 447 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed09g0179 | 447 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed09g0179 | 447 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 249 | IPR027417 | - | |
Sed09g0179 | 447 | Pfam | Elongation factor Tu domain 2 | 248 | 313 | IPR004161 | GO:0005525(InterPro) | |
Sed09g0179 | 447 | CDD | EF1_alpha_II | 230 | 320 | - | - | |
Sed09g0179 | 447 | FunFam | Elongation factor 1-alpha | 229 | 316 | - | - | |
Sed09g0179 | 447 | Hamap | Elongation factor Tu [tuf]. | 2 | 432 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
Sed09g0179 | 447 | Pfam | GTP-eEF1A C-terminal domain-like | 328 | 427 | IPR054696 | - | |
Sed09g0179 | 447 | CDD | EF1_alpha_III | 323 | 426 | - | - | |
Sed09g0179 | 447 | FunFam | Elongation factor 1-alpha | 323 | 430 | - | - | |
Sed09g0179 | 447 | Gene3D | Translation factors | 229 | 316 | - | - | |
Sed09g0179 | 447 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 230 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
Sed09g0179 | 447 | PANTHER | TRANSLATION FACTOR | 4 | 427 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
Sed09g0179 | 447 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
Sed09g0179 | 447 | FunFam | Elongation factor 1-alpha | 1 | 226 | - | - | |
Sed09g0179 | 447 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 326 | 429 | IPR009001 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed04g2076 | Sed-Chr4:35072490 | Sed09g0179 | Sed-Chr9:1445372 | 2.40E-255 | dispersed | |
Sed05g1649 | Sed-Chr5:30390127 | Sed09g0179 | Sed-Chr9:1445372 | 1.60E-74 | dispersed | |
Sed08g2749 | Sed-Chr8:39160409 | Sed09g0179 | Sed-Chr9:1445372 | 1.80E-76 | dispersed | |
Sed09g0179 | Sed-Chr9:1445372 | Sed13g2080 | Sed-Chr13:25561250 | 2.60E-76 | dispersed | |
Sed09g0179 | Sed-Chr9:1445372 | Sed09g0180 | Sed-Chr9:1445372 | 2.40E-260 | tandem | |
Sed04g2073 | Sed-Chr4:35059037 | Sed09g0179 | Sed-Chr9:1445372 | 5.30E-255 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0179 | K03231 | - | gmx:110008577 | 866.685 |