Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0187 ATGGCATCGACTTCTCTCGCTGGTGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCACCGCCGCAAACAACGTATGAGGATATCGTAGCCAATCCCAAGATCTTTATGGCGTCCTTAGAAAAGCTCCATTCTATCATGGGAACAAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAGGTCACTGCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTTACCTCAGTTTTCAACTTTCCATCGACGGCCACCAATGCATCGTTCGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCCACAATTTCTGATTCCTCTCCCTGCCCAAGTGCAGCTACATTTCCAATGCAAGGGATGACACAAGGGATGACTATGTTGCCGCCGCCAGATAATCATGCAGCATCCCAGCAGGCACGGGCTACTGCAACCGAACTTCCCGCAGTTGGTCCGAGTTTGACATCACCAGCAGGAGGGTTTCCGGTGATTGGGGTCATTGACGGAAAATTTGATAGTGGATATCTCGTTACCGTTACTATCGGAACTGAGCAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGACCAACCTGCTCAGCAACAGGTGTTTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACTACCTCCACCACACCAAATGTTCATCGTCGTCGCCGTCGGAAGAAGTCCGAGATAAAACGAAGGGATCCTGGTCATCCAAAGCCGAACAGAAGTGGATACAACTTCTTCTTTGCAGAGCAACATGCTAGACTAAAACCATTACACCCAGGAAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAACGATTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACCGAATCGAAATGGAGGATTACAGAGAGAAGCTGAGGGCAAGCCAAATCATCAGTGATGCAGTGCCATTACAGCAGCGACTTCCCGAGCCAGATCTGAATATGGTCTATACCGACAAAAACGAAGAAACCGATGGTGGTGACTCTCCTCAAACACCAGATAATGATACAAGCTATGTTGAAGGCGACTCCAGAGAGTATAAAACCCGGGAGAAGGACGAGGAAGAAGAAGAAGAGGAAGAAGAGGAGGAATCGGATGATGAAGACGAGTCTCCACACGGAGTTGGTAGTGTGGATGTAAACATTGTCGTTGAGGAGCACTGCAAGATGAGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGTACGGTTGGTGACAAGAAGGAAGTTTTCACCGGGGATTCGGTAATGGTGGAGGCAAACATAGAACCGGAACCAACAACAACTACGACAACAACGACAACAACAGCCATTAGAGAAGATTAA 1479 46.25 MASTSLAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATFPMQGMTQGMTMLPPPDNHAASQQARATATELPAVGPSLTSPAGGFPVIGVIDGKFDSGYLVTVTIGTEQLKGVLYQAPSDQPAQQQVFQPVGVFAKDGTTSTTPNVHRRRRRKKSEIKRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNDSERTVYQEKAMKDKERYRIEMEDYREKLRASQIISDAVPLQQRLPEPDLNMVYTDKNEETDGGDSPQTPDNDTSYVEGDSREYKTREKDEEEEEEEEEEESDDEDESPHGVGSVDVNIVVEEHCKMRTAEEDVRKESSTVGDKKEVFTGDSVMVEANIEPEPTTTTTTTTTTAIRED 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1478192 1485096 - Sed0026703.1 Sed09g0187 724951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0187 492 MobiDBLite consensus disorder prediction 368 492 - -
Sed09g0187 492 SMART ARID_2 32 122 - -
Sed09g0187 492 Gene3D High mobility group box domain 257 353 IPR036910 -
Sed09g0187 492 Gene3D - 28 130 IPR036431 GO:0003677(InterPro)
Sed09g0187 492 Coils Coil 395 422 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 243 280 - -
Sed09g0187 492 SUPERFAMILY HMG-box 266 345 IPR036910 -
Sed09g0187 492 CDD HMG-box_AtHMGB9-like 273 339 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 435 458 - -
Sed09g0187 492 FunFam High mobility group B protein 15 255 350 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 253 267 - -
Sed09g0187 492 Pfam HMG (high mobility group) box 273 340 IPR009071 -
Sed09g0187 492 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677(InterPro)
Sed09g0187 492 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677(InterPro)
Sed09g0187 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 273 340 IPR009071 -
Sed09g0187 492 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 389 - -
Sed09g0187 492 SMART bright_3 36 127 IPR001606 GO:0003677(InterPro)
Sed09g0187 492 MobiDBLite consensus disorder prediction 404 421 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 473 492 - -
Sed09g0187 492 Coils Coil 322 349 - -
Sed09g0187 492 SMART hmgende2 272 341 IPR009071 -
Sed09g0187 492 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677(InterPro)
Sed09g0187 492 SUPERFAMILY ARID-like 31 138 IPR036431 GO:0003677(InterPro)
Sed09g0187 492 FunFam High mobility group B protein 15 29 141 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2062 Sed-Chr4:35006046 Sed09g0187 Sed-Chr9:1478192 3.00E-138 dispersed
Sed04g2063 Sed-Chr4:35006806 Sed09g0187 Sed-Chr9:1478192 3.00E-138 dispersed
Sed01g2459 Sed-Chr1:18337435 Sed09g0187 Sed-Chr9:1478192 1.70E-69 transposed
Sed04g2060 Sed-Chr4:35005891 Sed09g0187 Sed-Chr9:1478192 3.00E-138 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39502 PF01388 ARID 3.30E-17 CL0123 Sed TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0187 - - - 0.0