Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0187 ATGGCATCGACTTCTCTCGCTGGTGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCATACCCACCGCCGCAAACAACGTATGAGGATATCGTAGCCAATCCCAAGATCTTTATGGCGTCCTTAGAAAAGCTCCATTCTATCATGGGAACAAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGACTTTTCGTGGAGGTCACTGCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTTACCTCAGTTTTCAACTTTCCATCGACGGCCACCAATGCATCGTTCGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCCACAATTTCTGATTCCTCTCCCTGCCCAAGTGCAGCTACATTTCCAATGCAAGGGATGACACAAGGGATGACTATGTTGCCGCCGCCAGATAATCATGCAGCATCCCAGCAGGCACGGGCTACTGCAACCGAACTTCCCGCAGTTGGTCCGAGTTTGACATCACCAGCAGGAGGGTTTCCGGTGATTGGGGTCATTGACGGAAAATTTGATAGTGGATATCTCGTTACCGTTACTATCGGAACTGAGCAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGACCAACCTGCTCAGCAACAGGTGTTTCAGCCTGTTGGTGTTTTTGCCAAAGATGGTACTACCTCCACCACACCAAATGTTCATCGTCGTCGCCGTCGGAAGAAGTCCGAGATAAAACGAAGGGATCCTGGTCATCCAAAGCCGAACAGAAGTGGATACAACTTCTTCTTTGCAGAGCAACATGCTAGACTAAAACCATTACACCCAGGAAAGGACAGGGAGATAAGCAGAATGATTGGTGAGCTTTGGAATAAACTTAACGATTCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACCGAATCGAAATGGAGGATTACAGAGAGAAGCTGAGGGCAAGCCAAATCATCAGTGATGCAGTGCCATTACAGCAGCGACTTCCCGAGCCAGATCTGAATATGGTCTATACCGACAAAAACGAAGAAACCGATGGTGGTGACTCTCCTCAAACACCAGATAATGATACAAGCTATGTTGAAGGCGACTCCAGAGAGTATAAAACCCGGGAGAAGGACGAGGAAGAAGAAGAAGAGGAAGAAGAGGAGGAATCGGATGATGAAGACGAGTCTCCACACGGAGTTGGTAGTGTGGATGTAAACATTGTCGTTGAGGAGCACTGCAAGATGAGAACAGCCGAAGAGGATGTTAGAAAAGAGAGTAGTACGGTTGGTGACAAGAAGGAAGTTTTCACCGGGGATTCGGTAATGGTGGAGGCAAACATAGAACCGGAACCAACAACAACTACGACAACAACGACAACAACAGCCATTAGAGAAGATTAA 1479 46.25 MASTSLAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSIMGTKFMIPIIGGKELDLHRLFVEVTARGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPTISDSSPCPSAATFPMQGMTQGMTMLPPPDNHAASQQARATATELPAVGPSLTSPAGGFPVIGVIDGKFDSGYLVTVTIGTEQLKGVLYQAPSDQPAQQQVFQPVGVFAKDGTTSTTPNVHRRRRRKKSEIKRRDPGHPKPNRSGYNFFFAEQHARLKPLHPGKDREISRMIGELWNKLNDSERTVYQEKAMKDKERYRIEMEDYREKLRASQIISDAVPLQQRLPEPDLNMVYTDKNEETDGGDSPQTPDNDTSYVEGDSREYKTREKDEEEEEEEEEEESDDEDESPHGVGSVDVNIVVEEHCKMRTAEEDVRKESSTVGDKKEVFTGDSVMVEANIEPEPTTTTTTTTTTAIRED 492
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1478192 1485096 - Sed0026703.1 Sed09g0187 724951

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0187 492 MobiDBLite consensus disorder prediction 368 492 - -
Sed09g0187 492 SMART ARID_2 32 122 - -
Sed09g0187 492 Gene3D High mobility group box domain 257 353 IPR036910 -
Sed09g0187 492 Gene3D - 28 130 IPR036431 GO:0003677(InterPro)
Sed09g0187 492 Coils Coil 395 422 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 243 280 - -
Sed09g0187 492 SUPERFAMILY HMG-box 266 345 IPR036910 -
Sed09g0187 492 CDD HMG-box_AtHMGB9-like 273 339 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 435 458 - -
Sed09g0187 492 FunFam High mobility group B protein 15 255 350 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 253 267 - -
Sed09g0187 492 Pfam HMG (high mobility group) box 273 340 IPR009071 -
Sed09g0187 492 CDD ARID_HMGB9-like 37 122 IPR045303 GO:0003677(InterPro)
Sed09g0187 492 Pfam ARID/BRIGHT DNA binding domain 38 122 IPR001606 GO:0003677(InterPro)
Sed09g0187 492 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 273 340 IPR009071 -
Sed09g0187 492 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 389 - -
Sed09g0187 492 SMART bright_3 36 127 IPR001606 GO:0003677(InterPro)
Sed09g0187 492 MobiDBLite consensus disorder prediction 404 421 - -
Sed09g0187 492 MobiDBLite consensus disorder prediction 473 492 - -
Sed09g0187 492 Coils Coil 322 349 - -
Sed09g0187 492 SMART hmgende2 272 341 IPR009071 -
Sed09g0187 492 ProSiteProfiles ARID domain profile. 35 126 IPR001606 GO:0003677(InterPro)
Sed09g0187 492 SUPERFAMILY ARID-like 31 138 IPR036431 GO:0003677(InterPro)
Sed09g0187 492 FunFam High mobility group B protein 15 29 141 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0187 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2062 Sed-Chr4:35006046 Sed09g0187 Sed-Chr9:1478192 3.00E-138 dispersed
Sed04g2063 Sed-Chr4:35006806 Sed09g0187 Sed-Chr9:1478192 3.00E-138 dispersed
Sed01g2459 Sed-Chr1:18337435 Sed09g0187 Sed-Chr9:1478192 1.70E-69 transposed
Sed04g2060 Sed-Chr4:35005891 Sed09g0187 Sed-Chr9:1478192 3.00E-138 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Sed09g0187 . 1 370 ARID Transcription Factor Family AT1G04880 56.9 2.8e-107 386.7
Sed04g2060 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2061 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2062 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g2063 . 14 330 ARID Transcription Factor Family AT1G04880 53.8 3.9e-88 323.2
Sed04g1052 . 200 480 ARID Transcription Factor Family AT1G20910 60.6 4.0e-89 326.2
Sed01g2459 . 16 310 ARID Transcription Factor Family AT1G76110 66.3 3.5e-110 396.0
Sed04g1052 . 200 510 ARID Transcription Factor Family AT1G76510 62.0 4.7e-107 386.0
Sed06g2291 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2292 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2295 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2296 . 2 781 ARID Transcription Factor Family AT3G43240 58.4 4.4e-262 901.7
Sed06g2293 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g2294 . 2 786 ARID Transcription Factor Family AT3G43240 58.0 3.1e-260 895.6
Sed06g0034 . 2 773 ARID Transcription Factor Family AT3G43240 58.1 1.4e-255 880.2
Sed04g2377 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
Sed04g2378 . 4 772 ARID Transcription Factor Family AT3G43240 57.4 1.7e-250 863.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
39502 PF01388 ARID 3.30E-17 CL0123 Sed TR