Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0193 ATGGCGGCACTCACCAAATGGCCTTCTCTGTCTCTTCTCTCCCTTGCAATGCTTATCTTCGTAACAATCGCTCTCATTCGGAACCAAGACGCCTCTCAAATCGCGACTGTGTTAGCGAAAAAGTTACGGAGCTCTAGCAACTCATCAATGGCGATTAGGTTGGTGAATGATGATGATTTGGAAGGACTTAACAACCCGTTTGCTGTGGATAATCCTGATGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGTACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGCTGCGACTCCAATTGGCACCGTAACCGTAAACGCCTTGCCGAATGCGGTATCGGGTTTGGTCGGAATGCTATTGGTGGTCGCAATGGTCGTTTCTACGTCGTCACTGATTCGAGCGACAACGATCCTGTGAACCCGAAGCCAGGGACACTTCGTCATGCGGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGATATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTCAAAACCATTGATGCTAGAGGGGTCAATGTACACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACTGGGAATGCTATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCAAGCCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACTATCTCCAACAACCACTTCACCCACCACAATGAGGTGATGCTTTTAGGACATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTACAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGAAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACAGCGGTAAGCGAATGGAAAAGCTGGAACTGGAGATCAGAAGGAGACATGCTGCTGAATGGAGCTTATTTCACTCCATCCGGCGCCGGAGCTTCGGCGAGTTACGCCAGAGCCTCCAGCTTGGGAGCCAAATCCGCCTCCATGGTTGGCTCCATCACTTCTTCGGCAGGTTCGCTCCCTTGTCGCCGCGGTCATCCCTGCTAG 1350 47.93 MAALTKWPSLSLLSLAMLIFVTIALIRNQDASQIATVLAKKLRSSSNSSMAIRLVNDDDLEGLNNPFAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRNGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAVSEWKSWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 449
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1553900 1559456 + Sed0017839.1 Sed09g0193 724957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0193 449 Pfam Pectate lyase 187 364 IPR002022 -
Sed09g0193 449 Gene3D - 100 442 IPR012334 -
Sed09g0193 449 PANTHER PECTATE LYASE 18-RELATED 26 446 IPR045032 GO:0030570(InterPro)
Sed09g0193 449 SMART amb_all 175 372 IPR002022 -
Sed09g0193 449 FunFam Pectate lyase 100 442 - -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 183 199 IPR018082 -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 391 415 IPR018082 -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 349 368 IPR018082 -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 123 140 IPR018082 -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 420 443 IPR018082 -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 247 268 IPR018082 -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 147 172 IPR018082 -
Sed09g0193 449 PRINTS Pollen allergen Amb family signature 327 346 IPR018082 -
Sed09g0193 449 SUPERFAMILY Pectin lyase-like 77 443 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed01g4237 Sed-Chr1:70681923 Sed09g0193 Sed-Chr9:1553900 3.70E-197 dispersed
Sed09g0193 Sed-Chr9:1553900 Sed12g0409 Sed-Chr12:2470045 2.10E-203 dispersed
Sed03g2641 Sed-Chr3:42361412 Sed09g0193 Sed-Chr9:1553900 1.60E-173 transposed
Sed04g2044 Sed-Chr4:34840872 Sed09g0193 Sed-Chr9:1553900 7.40E-241 wgd
Sed05g0178 Sed-Chr5:1087714 Sed09g0193 Sed-Chr9:1553900 5.50E-193 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0193 K01728 - csv:101217580 845.114