Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0193 | ATGGCGGCACTCACCAAATGGCCTTCTCTGTCTCTTCTCTCCCTTGCAATGCTTATCTTCGTAACAATCGCTCTCATTCGGAACCAAGACGCCTCTCAAATCGCGACTGTGTTAGCGAAAAAGTTACGGAGCTCTAGCAACTCATCAATGGCGATTAGGTTGGTGAATGATGATGATTTGGAAGGACTTAACAACCCGTTTGCTGTGGATAATCCTGATGAGATTGCTGCCTCTGTTGAGATGAGCATCCGTAATAGTACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACAGGCAATCCCATTGATGACTGCTGGCGCTGCGACTCCAATTGGCACCGTAACCGTAAACGCCTTGCCGAATGCGGTATCGGGTTTGGTCGGAATGCTATTGGTGGTCGCAATGGTCGTTTCTACGTCGTCACTGATTCGAGCGACAACGATCCTGTGAACCCGAAGCCAGGGACACTTCGTCATGCGGTCATTCAAGAGAAACCTCTTTGGATTGTGTTCAAAAGGGATATGGTGATTCAATTGAAACAGGAGCTCATCATGAACAGTTTCAAAACCATTGATGCTAGAGGGGTCAATGTACACATTGCTAATGGTGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACTGGGAATGCTATGGTGAGAAGCTCTCCAACTCATTTTGGGTGGAGAACCATGGCTGATGGAGATGCCATTTCCATCTTTGGATCAAGCCATATATGGATTGATCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACTATCTCCAACAACCACTTCACCCACCACAATGAGGTGATGCTTTTAGGACATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTACAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAAATGTATGCAATTGGTGGAAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAAACAGCGGTAAGCGAATGGAAAAGCTGGAACTGGAGATCAGAAGGAGACATGCTGCTGAATGGAGCTTATTTCACTCCATCCGGCGCCGGAGCTTCGGCGAGTTACGCCAGAGCCTCCAGCTTGGGAGCCAAATCCGCCTCCATGGTTGGCTCCATCACTTCTTCGGCAGGTTCGCTCCCTTGTCGCCGCGGTCATCCCTGCTAG | 1350 | 47.93 | MAALTKWPSLSLLSLAMLIFVTIALIRNQDASQIATVLAKKLRSSSNSSMAIRLVNDDDLEGLNNPFAVDNPDEIAASVEMSIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRNGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIQLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETAVSEWKSWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC | 449 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1553900 | 1559456 | + | Sed0017839.1 | Sed09g0193 | 724957 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0193 | 449 | Pfam | Pectate lyase | 187 | 364 | IPR002022 | - | |
Sed09g0193 | 449 | Gene3D | - | 100 | 442 | IPR012334 | - | |
Sed09g0193 | 449 | PANTHER | PECTATE LYASE 18-RELATED | 26 | 446 | IPR045032 | GO:0030570(InterPro) | |
Sed09g0193 | 449 | SMART | amb_all | 175 | 372 | IPR002022 | - | |
Sed09g0193 | 449 | FunFam | Pectate lyase | 100 | 442 | - | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 183 | 199 | IPR018082 | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 391 | 415 | IPR018082 | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 349 | 368 | IPR018082 | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 123 | 140 | IPR018082 | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 420 | 443 | IPR018082 | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 247 | 268 | IPR018082 | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 147 | 172 | IPR018082 | - | |
Sed09g0193 | 449 | PRINTS | Pollen allergen Amb family signature | 327 | 346 | IPR018082 | - | |
Sed09g0193 | 449 | SUPERFAMILY | Pectin lyase-like | 77 | 443 | IPR011050 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed01g4237 | Sed-Chr1:70681923 | Sed09g0193 | Sed-Chr9:1553900 | 3.70E-197 | dispersed | |
Sed09g0193 | Sed-Chr9:1553900 | Sed12g0409 | Sed-Chr12:2470045 | 2.10E-203 | dispersed | |
Sed03g2641 | Sed-Chr3:42361412 | Sed09g0193 | Sed-Chr9:1553900 | 1.60E-173 | transposed | |
Sed04g2044 | Sed-Chr4:34840872 | Sed09g0193 | Sed-Chr9:1553900 | 7.40E-241 | wgd | |
Sed05g0178 | Sed-Chr5:1087714 | Sed09g0193 | Sed-Chr9:1553900 | 5.50E-193 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0193 | K01728 | - | csv:101217580 | 845.114 |