Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0197 ATGGCGGCTCCAAATTGCTCCATGACCCTTGCCCAATTCCTGGGCCCCAACGTCACCAACTCCGGCGAGGCCGCCAGCTTCATCTGCGGCCAATTCTCCGCCTCCGCCGCCAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCGATGCAGCTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTTCGCGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCCGCCGGCGGTCTCTTCTACTACCTTTTCGGCTTCGCCTTCGCCTTCGGCACCCCCTCCAACGCCTTCATCGGCCGCCATTTCTTCGGCCTCGAATCGATCCCCGACGGCTCGACACCGACCCCGACGGACTACAGCTTCTTCCTTTATCAATGGGCTTTCGCCATTGCCGCCGCCGGCATCACCAGCGGCTCTATTGCCGAAAGAACCCAATTCGTCGCCTATCTAATCTACTCCTCTGTTTTGACCGGTTTTGTCTACCCGGTTGTCTCCCATTGGTTCTGGTCCGCCGACGGCTGGGCCAGCCCGGCCCGGACCAACGGCGATTTGCTATTCGGAACCGGCGTCATCGACTTCGCCGGTTCGGGTGTCGTGCACATGGTCGGCGGAATCGCAGGGCTTTGGGGCGCTTTAATTGAAGGGCCGAGGATCGGCCGGTTCGACCGAACCGGCCGGTCCGTCGCGCTACGAGGCCACAGCGCTTCGTTGGTGGTTCTCGGGACGTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCGTTTACGAAAATTCTGGTTCCGTATAACTCGGGTAATTTCTACGGCCAGTGGAGCGCCGTCGGCCGGACCGCCGTGACGACGACGCTGGCCGGTTGCACGGCGGCGCTGACTACCCTTTTTGGGAAAAGGATACTTTCCGGCCACTGGAATGTCACCGACGTCTGCAACGGTCTGCTCGGCGGGTTCGCCGCCATAACTTCCGGCTGCTCGGTGGTGGAGCCGTGGGCGGCGGTGATTTGTGGGTTTGTGGCGGCGGTGGTGTTGATCAGCTGCAATAAACTGGCGGAGAAGGTGAAGTATGACGACCCGTTGGAGGCGGCGCAGCTGCACGGCGGGTGCGGCGCGTGGGGGATCATTTTCACAGCGTTGTTCGCGACGAAGAAGTACGTGAACGAGGTGTACGGCGGCGACGTCAGCCGGCCGCATGGGCTGTTCATGGGCGGCGGGGGGAAACTATTGGGTGCGCATTTGATTCAGATTTTGGTGATTGTTGGATGGGTCAGTGCCACAATGGGACCGCTGTTTTATGGGCTTCATAAGCTGAAACTGCTCAGAATCTCGCCGGAAGATGAGATGGCAGGCATGGATATGACTAGGCACGGCGGGTTTGCTTACGTGTACCATGACGAGGATGAGTCATCAGCCAATGGGGTCCAGATGAGGAAGATTGATCCTAGGGGAATTAGTCCAGGTGGAAATTAA 1515 59.54 MAAPNCSMTLAQFLGPNVTNSGEAASFICGQFSASAANFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNAFIGRHFFGLESIPDGSTPTPTDYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSADGWASPARTNGDLLFGTGVIDFAGSGVVHMVGGIAGLWGALIEGPRIGRFDRTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYNSGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAAVVLISCNKLAEKVKYDDPLEAAQLHGGCGAWGIIFTALFATKKYVNEVYGGDVSRPHGLFMGGGGKLLGAHLIQILVIVGWVSATMGPLFYGLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESSANGVQMRKIDPRGISPGGN 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1585433 1588312 + Sed0010027.1 Sed09g0197 724961
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0197 504 FunFam Ammonium transporter 28 491 - -
Sed09g0197 504 Pfam Ammonium Transporter Family 50 476 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed09g0197 504 ProSitePatterns Ammonium transporters signature. 207 232 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Sed09g0197 504 SUPERFAMILY Ammonium transporter 46 457 - -
Sed09g0197 504 Gene3D Ammonium transporter AmtB like domains 29 495 IPR029020 -
Sed09g0197 504 PANTHER AMMONIUM TRANSPORTER 32 484 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Sed09g0197 504 NCBIfam ammonium transporter 47 476 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g1449 Sed-Chr2:50542844 Sed09g0197 Sed-Chr9:1585433 2.40E-224 dispersed
Sed11g0662 Sed-Chr11:8674279 Sed09g0197 Sed-Chr9:1585433 7.50E-205 transposed
Sed05g0155 Sed-Chr5:939671 Sed09g0197 Sed-Chr9:1585433 1.60E-201 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0197 K03320 - csv:101212168 893.264