Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0207 ATGCTTAAGAGCTCTGGTCCTTTGCACAAGTTTTCTACAAATATTTCTCCACAGAATACTGTCGGAAATTTACAAGATACAGATTCCAGTAGTAACAATATTTTTGCTAGTGGACATTCTTTCTCGTCATCTTATGATGGCTTTAATAATACAACTAAAAAAGGGTATAGTTCCCATGAAGTTGGGGAGAATGTGCGTGGAGCTTCGGAATTCATTGACACTCATACATCTGATCTTGGACAGCGAAAGCCTATTGATGTAACTGATTTTACTAGAATCAAGCCTGCAAATGTGCGGTCATATGAATCTGTTGGCTTGAATACTGATATCAGAAGCCCCTCCATCTATGAATCACCATACACAACATCATCTGAAAACAGTTTTAGGAGGTCTCGCTCATCGTTTCTTGATTCTCTTACTATACCTAATGCTTCTTCAGGGAGTTTTCTTGGAAATACTGAACATAATAAGGGATCTAGAATATCTGACGGGTTGAAAGCAAATGAAAAAGAGGCCCCTGTATCCTTCTCTTTTCAGAGTCCTATAAAATTTGATGGATTCAGAACAGATGAACGTGTTGGCACAGAGCCATTGCCTTTTCAGAAGCCATTAGTGAATATGAAAATAATGGGAACACCCTCAGATTTTGCCTCTCAAAATACTCCAGTGTCGAATAGCAATTCATTTCCTCCAGTTTTTTCTGCCAAGGGGTTGGACCAGCCAATTGTAGGGATAGAGGATAGTACGATGAAGAGGACACATGAACTTTTTTCGTCTAAGAAAAATGAAGATTTTGCTGCTCTGGAACAGCATATTGAAGATTTGACACAGGAAAAGTTCTCGTTACAAAGAGCTATGGAGGCTTCAAAGGCTTTAGCAGAGTCCTTAGCTGCTGAAAATACATCTCTTACAGATAGTTATAATAAACAGAGAAGCGTTGTCAACCAACTAAAATCTGACATGGAGATGTTACAGGAGGAAATGAAGATGCAGATGGTTGAACTGGAGTCTATCAAACATGAGTATGCAAATGCACAACTTGAGTGTAATGCAGCTGATGAACGTGCCAAGCTGATAGCTTCTGAAGTAATTGGTCTTGAAGAGAAGGCCTTAAGACTAAGGTCTAATGAGTTAAAGCTGGAGAGACAATTAGAGAACTTAGAAGCTGAAATCTCTTCGTACAAGAAGAAAATGTCTAGCATGGAGAAAGAACGTCATGATTTTCAATCAACTATTGATGCTCTTCAGGAAGAGAAGAAGTTGTTGCAGTCTAAGTTACGCAAAGCTTCCACAATCGAAAAGTCTATCGATATTAGCAACACTTCTGATAGAAAAGACATGGCGACATCTACGGAAGATTTAGTGAATACAGATACTACTCCTGGCACTTCTAACGATGAGGTAAAAGATGGAGCATCTCTTACTGAAGATGATATCTCTGGAGCTCCCATGCTGCTTGAAAATGCCACTACTGAAGTTTCGTCGGCCATTATCCCTCTGGATCATAGGAGGATGGTTCAAAACATTAATGCTTTAATAACCGAGTTAGCTGCAGAGAAAGAGGAGTTAACGCAAACTTTGGCATCTGAGTTAGCGAGCAGTTCTCGGTTGAAGGAGTTGAACAAAGAGTTGTCTCGGAAACTAGAAACACAAACTCAAAGATTAGAGCTTTTGACTGCTCAAAGTATGGCTGGTGAGATTGTTCCTGTGAGGCAACCTGATTCTCGCACAGCGCGCGGTGAAGATACTGTACTCGCAGATGAAGGCGATGAGGTGGTGGAAAGAGTCTTGGGATGGATTATGAAGCTCTTTCCTGGCGGTCCACCGCGCCGAAGGACCAGCAAGCTTCTTTGA 1854 40.83 MLKSSGPLHKFSTNISPQNTVGNLQDTDSSSNNIFASGHSFSSSYDGFNNTTKKGYSSHEVGENVRGASEFIDTHTSDLGQRKPIDVTDFTRIKPANVRSYESVGLNTDIRSPSIYESPYTTSSENSFRRSRSSFLDSLTIPNASSGSFLGNTEHNKGSRISDGLKANEKEAPVSFSFQSPIKFDGFRTDERVGTEPLPFQKPLVNMKIMGTPSDFASQNTPVSNSNSFPPVFSAKGLDQPIVGIEDSTMKRTHELFSSKKNEDFAALEQHIEDLTQEKFSLQRAMEASKALAESLAAENTSLTDSYNKQRSVVNQLKSDMEMLQEEMKMQMVELESIKHEYANAQLECNAADERAKLIASEVIGLEEKALRLRSNELKLERQLENLEAEISSYKKKMSSMEKERHDFQSTIDALQEEKKLLQSKLRKASTIEKSIDISNTSDRKDMATSTEDLVNTDTTPGTSNDEVKDGASLTEDDISGAPMLLENATTEVSSAIIPLDHRRMVQNINALITELAAEKEELTQTLASELASSSRLKELNKELSRKLETQTQRLELLTAQSMAGEIVPVRQPDSRTARGEDTVLADEGDEVVERVLGWIMKLFPGGPPRRRTSKLL 617
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1642890 1656855 - Sed0008500.3 Sed09g0207 724971

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0207 617 Coils Coil 534 561 - -
Sed09g0207 617 Coils Coil 307 355 - -
Sed09g0207 617 MobiDBLite consensus disorder prediction 452 469 - -
Sed09g0207 617 MobiDBLite consensus disorder prediction 7 28 - -
Sed09g0207 617 PANTHER PROTEIN BLISTER 8 617 IPR044194 GO:0040008(InterPro)
Sed09g0207 617 Coils Coil 370 432 - -
Sed09g0207 617 Coils Coil 502 526 - -
Sed09g0207 617 MobiDBLite consensus disorder prediction 1 28 - -
Sed09g0207 617 Coils Coil 258 292 - -
Sed09g0207 617 MobiDBLite consensus disorder prediction 442 472 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0207 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed09g0205 Sed-Chr9:1642890 Sed09g0207 Sed-Chr9:1642890 3.00E-304 dispersed
Sed09g0206 Sed-Chr9:1642890 Sed09g0207 Sed-Chr9:1642890 1.50E-300 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g814 . . . . Bpe04g01051 . Bma04g01032 . Cmo08g01019 Cmo17g00127 . . . . . . . . . . . . . . . . . . . . . Cone14ag0199 Cone15ag0212 . . . Csa02g01012 Chy05g00276 . . . . . . . . . Sed09g0207 . . Cma08g01048 Cma17g00125 Car08g00923 Car17g00111 Cpe12g00109 . Bhi12g01537 Tan06g2351 Cmetu05g1285 . . . Lcy13g0426 . . . . . . . Lsi09g01178 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004173 0 3 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 3 1 1 5 2 1 43