Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0219 ATGGCCGATGAAGTAGCGGTGGACGGCGCGGCGGCGGCGGTGGCGGCGATAGACGTCGCCGATTCCAACCAGCAGTCGCACAAGTTGGAGAGAAAATGGACGTTTTGGTTCGATAACCAGTCGAGGCCGAAGCAAGGTGCTGCTTGGGGTACCTCTTTGCGCAATGTTTACACCTTCGACACCGTCGAAGAATTTTTCTGTTTGCACGATCAGATATTCAAGCCGAGCAAGTTGCCCGCTAATGCAGATTTCCATATGTTCAAATCTGGAGTTGAACCGAAATGGGAAGATCCCGAGTGCGCTTATGGAGGAAAATGGACTGTCACAAGCAATAGAAAGGCTGACCTTGATAGCATGTGGCTGGAAACGTTGATGGCTCTAATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCCAATGTTCGCCAGAGGCAGGACAAAATTGCATTGTGGACTAAGACAGCAACTAACGAGGCTGCTCAGATGAGCATCGGTAGGAAATGGAAGGAGATCATCGACGTCACCGACAAGATTTCCTTCAGCTTTCATGATGATTCGAAGAGGGAAAAGTCCGCAAAAGCTCGATACAGTGTCTGA 609 49.75 MADEVAVDGAAAAVAAIDVADSNQQSHKLERKWTFWFDNQSRPKQGAAWGTSLRNVYTFDTVEEFFCLHDQIFKPSKLPANADFHMFKSGVEPKWEDPECAYGGKWTVTSNRKADLDSMWLETLMALIGEQFEESDEICGVVANVRQRQDKIALWTKTATNEAAQMSIGRKWKEIIDVTDKISFSFHDDSKREKSAKARYSV 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1733584 1738190 + Sed0026645.1 Sed09g0219 724983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0219 202 FunFam Eukaryotic translation initiation factor 4E 18 202 - -
Sed09g0219 202 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 20 195 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Sed09g0219 202 Pfam Eukaryotic initiation factor 4E 28 184 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed09g0219 202 ProSitePatterns Eukaryotic initiation factor 4E signature. 83 106 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Sed09g0219 202 SUPERFAMILY eIF4e-like 23 196 IPR023398 -
Sed09g0219 202 Gene3D RNA Cap, Translation Initiation Factor Eif4e 18 202 IPR023398 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2704 Sed-Chr8:39011652 Sed09g0219 Sed-Chr9:1733584 5.90E-56 dispersed
Sed09g0219 Sed-Chr9:1733584 Sed09g0220 Sed-Chr9:1733584 4.30E-95 tandem
Sed04g2012 Sed-Chr4:34586625 Sed09g0219 Sed-Chr9:1733584 6.80E-98 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0219 K03259 - csv:101208495 360.147