Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0220 ATGGCCGATGAAGTAGCGGTGGACGGCGCGGCGGCGGCGGTGGCGGCGATAGACGTCGCCGATTCCAACCAGCAGTCGCACAAGTTGGAGAGAAAATGGACGTTTTGGTTCGATAACCAGTCGAGGCCGAAGCAAGGTGCTGCTTGGGGTACCTCTTTGCGCAATGTTTACACCTTCGACACCGTCGAAGAATTTTTCTGTTTGCACGATCAGATATTCAAGCCGAGCAAGTTGCCCGCTAATGCAGATTTCCATATGTTCAAATCTGGAGTTGAACCGAAATGGGAAGATCCCGAGTGCGCTTATGGAGGAAAATGGACTGTCACAAGCAATAGAAAGGCTGACCTTGATAGCATGTGGCTGGAAACGTTGATGGCTCTAATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCCAATGTTCGCCAGAGGCAGGACAAAATTGCATTGTGGACTAAGACAGCAACTAACGAGGCTGCTCAGGTGACATTGAGAACCCATGTTTATCCTCACCTCAATTAG 534 50.0 MADEVAVDGAAAAVAAIDVADSNQQSHKLERKWTFWFDNQSRPKQGAAWGTSLRNVYTFDTVEEFFCLHDQIFKPSKLPANADFHMFKSGVEPKWEDPECAYGGKWTVTSNRKADLDSMWLETLMALIGEQFEESDEICGVVANVRQRQDKIALWTKTATNEAAQVTLRTHVYPHLN 177
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1733584 1738190 + Sed0026645.2 Sed09g0220 724984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0220 177 FunFam Eukaryotic translation initiation factor 4E 18 175 - -
Sed09g0220 177 Pfam Eukaryotic initiation factor 4E 28 172 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
Sed09g0220 177 SUPERFAMILY eIF4e-like 23 177 IPR023398 -
Sed09g0220 177 Gene3D RNA Cap, Translation Initiation Factor Eif4e 8 176 IPR023398 -
Sed09g0220 177 ProSitePatterns Eukaryotic initiation factor 4E signature. 83 106 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Sed09g0220 177 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 20 173 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0006413(InterPro)|GO:0016281(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g2012 Sed-Chr4:34586625 Sed09g0220 Sed-Chr9:1733584 1.40E-79 dispersed
Sed09g0219 Sed-Chr9:1733584 Sed09g0220 Sed-Chr9:1733584 4.30E-95 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0220 K03259 - csv:101208495 293.893