Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0246 ATGGGCGCTCGAACCAGTAACCGTAAGCGTGACGATGAGTGTTTGAGCATCAATCGTTCGTATTCATCTTTGAAATCACCAGATTTTCGCGTCTCGAAGAAACCTAGATTTTCAGCTATGTCTTCAGATCGGCCTGTTGTTTCGTCGAACTCTACAGTGGCTAGGCTGTCCAGGTATCCTGAAAACACTCGGCAATTGCGTCGAGAAGTCCATGGTCCTTGTAGAGTGCTCAAATTTGGGCTTCCTAGGAGTTTCTTTAAGCTATGGGAGTCGAAAAATAGCCATTCGTCGGAACAGGATGAGGCGGGGAATGTTTTGTCTTACAATTACCAGATTGCAAAGCGTAATGCTCTTGGTGCTTTGCGGTCCTTCCCGAAGGATGTTATTGAATTGGATTCAGACACCCAAACTGATGGAGGCGCTTCTGGAGATTTGAAGGACGAGGAGGATGTTGAGGTAATTGAAGATGATAAGCGAGAATGGAGCTCAATTTCTTCGGAACAGAGGCTTGGTGCAGTCGATACAATGCAGGAATCGGATGCAAAGATGATCGATGTTCATCAGCCATTGTTGTCTTATGTAGTTGTAGATTTGACCAATGACGATTCAAAAGTTGAGAAAATGCTTGGTTCTTTGTCACTGGACCCGGATATATCCAGTGTTTCTGCTTACAAAAAGTTGCTCCAGAGTGTGGAAAAACGAACATCGAGATTGAAAAGCTTGGATTTTGAAATCGATGTGAATGAGAATCGTCGGTCAATTTTTCAATCTCACACCCCAAAGAAGAAGCCCGTCGATGAGATTCCTCAAGAACTTTTTCTTCCTCTTACTAAGGAAGAGGAGGCCGAGGTTGAACAGGCATTCTCTACTAACCGGAGGAGGGTTTTGGTCACACATGAGAATTCAAACATTGAGATTAATGAACAAGCTCTGCAGTGTCTACGACCGTGTGCTTGGTTAAACGATGAGGTGATTAATTTGTATCTTGAATTGCTGAAAGAAAGGGAAAGAAGGGAGCCAAAGAAGTATTTGAAATGTCATTTCTTTAATTCATTTTTCTATAAAAAGTTGGCAAATGGAAGGGGGGATGGCTATGATTACAAATCTGTTAGAAGATGGACCAGCCAAAGGAAGTTGGACTATGAACTCTTTGATTGTGATAAAATATTTGTCCCCATCCATAGAGAAATTCACTGGTGCCTAGCAGTGATCAACAAGAAAGAGAAGAAGTTTCAGTATCTTGATTCTCTCAAGGGAATGGATCCTCATGTTTTAAAAACATTGGCGAGATACTATGTTGATGAGGTGAAGGACAAGAGTGGAAAAGACATTGATGTAAGCTCTTGGACTGAAGAATTTGTCGAAGACCTTCCCGAGCAAGAAAATGGGTTTGATTGTGGCATGTTTATGATCAAATATACAGATTTCTATAGCAGAGGTTTGAATCTCTGTTTCAAGCAGGACCACATGCCTTATTTTCGACTTAGAACAGCCAAGGAGATTTTGAAATTGAGAGCTAACTGA 1524 41.73 MGARTSNRKRDDECLSINRSYSSLKSPDFRVSKKPRFSAMSSDRPVVSSNSTVARLSRYPENTRQLRREVHGPCRVLKFGLPRSFFKLWESKNSHSSEQDEAGNVLSYNYQIAKRNALGALRSFPKDVIELDSDTQTDGGASGDLKDEEDVEVIEDDKREWSSISSEQRLGAVDTMQESDAKMIDVHQPLLSYVVVDLTNDDSKVEKMLGSLSLDPDISSVSAYKKLLQSVEKRTSRLKSLDFEIDVNENRRSIFQSHTPKKKPVDEIPQELFLPLTKEEEAEVEQAFSTNRRRVLVTHENSNIEINEQALQCLRPCAWLNDEVINLYLELLKERERREPKKYLKCHFFNSFFYKKLANGRGDGYDYKSVRRWTSQRKLDYELFDCDKIFVPIHREIHWCLAVINKKEKKFQYLDSLKGMDPHVLKTLARYYVDEVKDKSGKDIDVSSWTEEFVEDLPEQENGFDCGMFMIKYTDFYSRGLNLCFKQDHMPYFRLRTAKEILKLRAN 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1929014 1934191 + Sed0005683.1 Sed09g0246 725010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0246 507 Gene3D Adenoviral Proteinase; Chain A 273 505 - -
Sed09g0246 507 SUPERFAMILY Cysteine proteinases 273 506 IPR038765 -
Sed09g0246 507 PANTHER SENTRIN/SUMO-SPECIFIC PROTEASE 204 502 - GO:0005634(PANTHER)|GO:0016926(PANTHER)|GO:0016929(PANTHER)
Sed09g0246 507 ProSiteProfiles Ubiquitin-like protease family profile. 304 477 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
Sed09g0246 507 FunFam Ubiquitin-like-specific protease ESD4 263 505 - -
Sed09g0246 507 Pfam Ulp1 protease family, C-terminal catalytic domain 319 501 IPR003653 GO:0006508(InterPro)|GO:0008234(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0246 K08592 - - csv:101210787 807.364
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g0206 Sed-Chr4:1521553 Sed09g0246 Sed-Chr9:1929014 2.50E-19 dispersed
Sed09g0246 Sed-Chr9:1929014 Sed10g1884 Sed-Chr10:35704425 2.70E-21 dispersed
Sed04g1795 Sed-Chr4:32558679 Sed09g0246 Sed-Chr9:1929014 5.90E-231 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g298 . . . Bda08g00290 . . . Bma05g01035 Cmo08g01202 Cmo17g00315 . . . . . . . . . . . . . . . . . . . . . Cone14ag0762 Cone15ag0771 . . . . Chy11g01509 . . . . . Bpe05g00837 . . . Sed09g0246 . . Cma08g01227 Cma17g00326 Car08g01103 Car17g00300 Cpe12g00277 . Bhi12g02057 Tan06g2678 Cmetu11g0237 . Hepe03g0102 . . . . . . . . . Lsi09g01430 . . Cme11g02011
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006082 1 3 1 1 1 1 3 1 1 1 0 1 1 1 1 2 1 2 2 1 1 2 1 1 2 1 1 2 1 1 39