Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0254 | ATGACCAACAAAGCTGAAAGTGACAAAAAGAAGAAGAATATTGCTGTAATAAGTGCCTCTGCTCTAATCCTTGTGGCCATGGTTGTCGCGGTTACTGTCGGCGTCAACACCTCCCCCTACAAAGACGAGGCCGAAGGTCACGATAATGGCGAGGGAGTCGGGAAACTTACGACATCGAACAAAGCCATCAAAGCCATTTGTCAACCTACGGATTACAAAGAAAACTGCGAGCAAAGCCTAATGGCCGAAGCTGGCAACACAACAGACCCGAAAGAGCTTGCAAAAGTCGCCTTCAAAGTCGTCGTGGAAAGGCTCAACTCGGCGATCAGAAACTCCACCACGCTTCAAGAGCTTGCCAAGGATCCAAGAGCCAACCAAGCGCTGCAAAACTGTCGCGAGCTTTTAGAATACGCGATCGACGATTTAAACGAGTCGTTTGCCCGAATCGGCACGTTTGAAATGTCGAAACTTGGCGAATTTGTGGATGATTTGAAGATATGGCTTAGTGGAGCCCTAACGTACGAACAAACATGTTTGGACGGATTCGAAAACACGACGGGCGATGCGGGTGAGAAAATGAAGCACTTTTTGAAGTCGTCTCAAGAAATGACGAGCAACGGATTGGCGATCGTGTCAGAATTGTCGACGATGTTGGGGTCGATGCAGATGTCGGGGACGACGGGGGGGCATCGAAAGTTGTTGGATGACAAAGAGTTTCCATCGTGGGTGAGCGATGGAAAGAGGCGATTGATGCAAATGCGACCTGCAGCGATAAAGCCAGATATAGTGGTGGCACAGGACGGAAGTGGAAAATACAAGACGATTAATGCAGCTTTGGCTGATGTGCCTAAGAAGAGCAATAAAACATTCGTGATTTATGTGAAGGCAGGAATTTATAAAGAAATTGTTGTGATTCCCAAGGCTTTGACTCATATTACAATGTATGGTGATGGTCCCACCAAAACTATCGTCACCGGTAATTTGAACTTTGTCGATGGCATTCAAACTTTCAAGACTGCTACCTTCTCCGTGGTGGGAGCCAATTTCTTTTGCCGAGACATGGGATTCGAGAACACCGCAGGAGCAGCAAAGCACCAAGCCGTAGCACTACGAGTCCAATCCGATAGATCAATCTTCTACAATTGCAAAATGGACGCCTTTCAAGACACACTCTATGTACAAGCTCATCGCCAATTTTACCGCGACTGTTCAATCAGCGGCACAATCGACTTCGTCTTCGGAAACTCCGCTGCCATCTTCCAAAACTGCAAGCTCATAGTCCGTAAACCAATGGACAACCAACAATGCATCGTGACAGCACAAGGCCGACTAGACCGTCGCGAGCCAACAGCTCTGATCTTCCAAAGCTGCCACTTCATGGGCGACCCAGCATACTTACCGCACAAAGCCATTAACAAAGCCTACCTCGGCCGACCCTGGAAGCAATACTCTCGAACCATCATCATCGGATCGCAAATCGACGACCTAATCCAACCCCAAGGATGGTTACCTTGGATGGGCGATTTCGGGCTCAACACATTGTTTTATGCTGAGGTTTTGAATAAAGGACCTGGAGCTGATAAGAGCAAAAGAGTTAAATGGAGAGGCATTAAAAATATTACACCTCAACATGCTGCAGATTTTACTCCTTGGAGGTTTATTAATGGGAATGCTTGGATTAAGGATAAGGGAATTCCATATGCTCCTGGAATGATGTAA | 1719 | 47.06 | MTNKAESDKKKKNIAVISASALILVAMVVAVTVGVNTSPYKDEAEGHDNGEGVGKLTTSNKAIKAICQPTDYKENCEQSLMAEAGNTTDPKELAKVAFKVVVERLNSAIRNSTTLQELAKDPRANQALQNCRELLEYAIDDLNESFARIGTFEMSKLGEFVDDLKIWLSGALTYEQTCLDGFENTTGDAGEKMKHFLKSSQEMTSNGLAIVSELSTMLGSMQMSGTTGGHRKLLDDKEFPSWVSDGKRRLMQMRPAAIKPDIVVAQDGSGKYKTINAALADVPKKSNKTFVIYVKAGIYKEIVVIPKALTHITMYGDGPTKTIVTGNLNFVDGIQTFKTATFSVVGANFFCRDMGFENTAGAAKHQAVALRVQSDRSIFYNCKMDAFQDTLYVQAHRQFYRDCSISGTIDFVFGNSAAIFQNCKLIVRKPMDNQQCIVTAQGRLDRREPTALIFQSCHFMGDPAYLPHKAINKAYLGRPWKQYSRTIIIGSQIDDLIQPQGWLPWMGDFGLNTLFYAEVLNKGPGADKSKRVKWRGIKNITPQHAADFTPWRFINGNAWIKDKGIPYAPGMM | 572 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 2032683 | 2034484 | - | Sed0026132.1 | Sed09g0254 | 725018 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0254 | 572 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 60 | 214 | IPR035513 | - | |
Sed09g0254 | 572 | FunFam | Pectinesterase | 255 | 571 | - | - | |
Sed09g0254 | 572 | NCBIfam | pectinesterase inhibitor domain | 58 | 214 | IPR006501 | GO:0004857(InterPro) | |
Sed09g0254 | 572 | CDD | PMEI-like_3 | 65 | 216 | - | - | |
Sed09g0254 | 572 | Pfam | Plant invertase/pectin methylesterase inhibitor | 61 | 210 | IPR006501 | GO:0004857(InterPro) | |
Sed09g0254 | 572 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 57 | 215 | IPR035513 | - | |
Sed09g0254 | 572 | FunFam | Pectinesterase | 59 | 215 | - | - | |
Sed09g0254 | 572 | Pfam | Pectinesterase | 261 | 557 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
Sed09g0254 | 572 | PANTHER | PECTINESTERASE | 13 | 561 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Sed09g0254 | 572 | SMART | PMEI_2 | 58 | 210 | IPR006501 | GO:0004857(InterPro) | |
Sed09g0254 | 572 | SUPERFAMILY | Pectin lyase-like | 256 | 569 | IPR011050 | - | |
Sed09g0254 | 572 | ProSitePatterns | Pectinesterase signature 1. | 286 | 305 | IPR018040 | - | |
Sed09g0254 | 572 | Gene3D | - | 255 | 571 | IPR012334 | - | |
Sed09g0254 | 572 | ProSitePatterns | Pectinesterase signature 2. | 405 | 414 | IPR033131 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed03g1037 | Sed-Chr3:6351593 | Sed09g0254 | Sed-Chr9:2032683 | 8.00E-98 | dispersed | |
Sed04g3998 | Sed-Chr4:47705999 | Sed09g0254 | Sed-Chr9:2032683 | 2.80E-173 | dispersed | |
Sed08g2620 | Sed-Chr8:38465075 | Sed09g0254 | Sed-Chr9:2032683 | 9.40E-108 | dispersed | |
Sed09g0254 | Sed-Chr9:2032683 | Sed12g0806 | Sed-Chr12:4957211 | 1.10E-172 | dispersed | |
Sed09g0254 | Sed-Chr9:2032683 | Sed09g0255 | Sed-Chr9:2036900 | 4.60E-288 | tandem | |
Sed07g2910 | Sed-Chr7:43672743 | Sed09g0254 | Sed-Chr9:2032683 | 9.80E-132 | transposed | |
Sed12g0805 | Sed-Chr12:4944696 | Sed09g0254 | Sed-Chr9:2032683 | 1.40E-183 | wgd | |
Sed02g1163 | Sed-Chr2:48755114 | Sed09g0254 | Sed-Chr9:2032683 | 9.80E-206 | wgd | |
Sed04g2368 | Sed-Chr4:37098954 | Sed09g0254 | Sed-Chr9:2032683 | 2.30E-109 | wgd | |
Sed04g1778 | Sed-Chr4:32417976 | Sed09g0254 | Sed-Chr9:2032683 | 5.40E-249 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0254 | K01051 | - | csv:101221958 | 913.679 |