Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0254 ATGACCAACAAAGCTGAAAGTGACAAAAAGAAGAAGAATATTGCTGTAATAAGTGCCTCTGCTCTAATCCTTGTGGCCATGGTTGTCGCGGTTACTGTCGGCGTCAACACCTCCCCCTACAAAGACGAGGCCGAAGGTCACGATAATGGCGAGGGAGTCGGGAAACTTACGACATCGAACAAAGCCATCAAAGCCATTTGTCAACCTACGGATTACAAAGAAAACTGCGAGCAAAGCCTAATGGCCGAAGCTGGCAACACAACAGACCCGAAAGAGCTTGCAAAAGTCGCCTTCAAAGTCGTCGTGGAAAGGCTCAACTCGGCGATCAGAAACTCCACCACGCTTCAAGAGCTTGCCAAGGATCCAAGAGCCAACCAAGCGCTGCAAAACTGTCGCGAGCTTTTAGAATACGCGATCGACGATTTAAACGAGTCGTTTGCCCGAATCGGCACGTTTGAAATGTCGAAACTTGGCGAATTTGTGGATGATTTGAAGATATGGCTTAGTGGAGCCCTAACGTACGAACAAACATGTTTGGACGGATTCGAAAACACGACGGGCGATGCGGGTGAGAAAATGAAGCACTTTTTGAAGTCGTCTCAAGAAATGACGAGCAACGGATTGGCGATCGTGTCAGAATTGTCGACGATGTTGGGGTCGATGCAGATGTCGGGGACGACGGGGGGGCATCGAAAGTTGTTGGATGACAAAGAGTTTCCATCGTGGGTGAGCGATGGAAAGAGGCGATTGATGCAAATGCGACCTGCAGCGATAAAGCCAGATATAGTGGTGGCACAGGACGGAAGTGGAAAATACAAGACGATTAATGCAGCTTTGGCTGATGTGCCTAAGAAGAGCAATAAAACATTCGTGATTTATGTGAAGGCAGGAATTTATAAAGAAATTGTTGTGATTCCCAAGGCTTTGACTCATATTACAATGTATGGTGATGGTCCCACCAAAACTATCGTCACCGGTAATTTGAACTTTGTCGATGGCATTCAAACTTTCAAGACTGCTACCTTCTCCGTGGTGGGAGCCAATTTCTTTTGCCGAGACATGGGATTCGAGAACACCGCAGGAGCAGCAAAGCACCAAGCCGTAGCACTACGAGTCCAATCCGATAGATCAATCTTCTACAATTGCAAAATGGACGCCTTTCAAGACACACTCTATGTACAAGCTCATCGCCAATTTTACCGCGACTGTTCAATCAGCGGCACAATCGACTTCGTCTTCGGAAACTCCGCTGCCATCTTCCAAAACTGCAAGCTCATAGTCCGTAAACCAATGGACAACCAACAATGCATCGTGACAGCACAAGGCCGACTAGACCGTCGCGAGCCAACAGCTCTGATCTTCCAAAGCTGCCACTTCATGGGCGACCCAGCATACTTACCGCACAAAGCCATTAACAAAGCCTACCTCGGCCGACCCTGGAAGCAATACTCTCGAACCATCATCATCGGATCGCAAATCGACGACCTAATCCAACCCCAAGGATGGTTACCTTGGATGGGCGATTTCGGGCTCAACACATTGTTTTATGCTGAGGTTTTGAATAAAGGACCTGGAGCTGATAAGAGCAAAAGAGTTAAATGGAGAGGCATTAAAAATATTACACCTCAACATGCTGCAGATTTTACTCCTTGGAGGTTTATTAATGGGAATGCTTGGATTAAGGATAAGGGAATTCCATATGCTCCTGGAATGATGTAA 1719 47.06 MTNKAESDKKKKNIAVISASALILVAMVVAVTVGVNTSPYKDEAEGHDNGEGVGKLTTSNKAIKAICQPTDYKENCEQSLMAEAGNTTDPKELAKVAFKVVVERLNSAIRNSTTLQELAKDPRANQALQNCRELLEYAIDDLNESFARIGTFEMSKLGEFVDDLKIWLSGALTYEQTCLDGFENTTGDAGEKMKHFLKSSQEMTSNGLAIVSELSTMLGSMQMSGTTGGHRKLLDDKEFPSWVSDGKRRLMQMRPAAIKPDIVVAQDGSGKYKTINAALADVPKKSNKTFVIYVKAGIYKEIVVIPKALTHITMYGDGPTKTIVTGNLNFVDGIQTFKTATFSVVGANFFCRDMGFENTAGAAKHQAVALRVQSDRSIFYNCKMDAFQDTLYVQAHRQFYRDCSISGTIDFVFGNSAAIFQNCKLIVRKPMDNQQCIVTAQGRLDRREPTALIFQSCHFMGDPAYLPHKAINKAYLGRPWKQYSRTIIIGSQIDDLIQPQGWLPWMGDFGLNTLFYAEVLNKGPGADKSKRVKWRGIKNITPQHAADFTPWRFINGNAWIKDKGIPYAPGMM 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2032683 2034484 - Sed0026132.1 Sed09g0254 725018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0254 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 214 IPR035513 -
Sed09g0254 572 FunFam Pectinesterase 255 571 - -
Sed09g0254 572 NCBIfam pectinesterase inhibitor domain 58 214 IPR006501 GO:0004857(InterPro)
Sed09g0254 572 CDD PMEI-like_3 65 216 - -
Sed09g0254 572 Pfam Plant invertase/pectin methylesterase inhibitor 61 210 IPR006501 GO:0004857(InterPro)
Sed09g0254 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 215 IPR035513 -
Sed09g0254 572 FunFam Pectinesterase 59 215 - -
Sed09g0254 572 Pfam Pectinesterase 261 557 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed09g0254 572 PANTHER PECTINESTERASE 13 561 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed09g0254 572 SMART PMEI_2 58 210 IPR006501 GO:0004857(InterPro)
Sed09g0254 572 SUPERFAMILY Pectin lyase-like 256 569 IPR011050 -
Sed09g0254 572 ProSitePatterns Pectinesterase signature 1. 286 305 IPR018040 -
Sed09g0254 572 Gene3D - 255 571 IPR012334 -
Sed09g0254 572 ProSitePatterns Pectinesterase signature 2. 405 414 IPR033131 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed03g1037 Sed-Chr3:6351593 Sed09g0254 Sed-Chr9:2032683 8.00E-98 dispersed
Sed04g3998 Sed-Chr4:47705999 Sed09g0254 Sed-Chr9:2032683 2.80E-173 dispersed
Sed08g2620 Sed-Chr8:38465075 Sed09g0254 Sed-Chr9:2032683 9.40E-108 dispersed
Sed09g0254 Sed-Chr9:2032683 Sed12g0806 Sed-Chr12:4957211 1.10E-172 dispersed
Sed09g0254 Sed-Chr9:2032683 Sed09g0255 Sed-Chr9:2036900 4.60E-288 tandem
Sed07g2910 Sed-Chr7:43672743 Sed09g0254 Sed-Chr9:2032683 9.80E-132 transposed
Sed12g0805 Sed-Chr12:4944696 Sed09g0254 Sed-Chr9:2032683 1.40E-183 wgd
Sed02g1163 Sed-Chr2:48755114 Sed09g0254 Sed-Chr9:2032683 9.80E-206 wgd
Sed04g2368 Sed-Chr4:37098954 Sed09g0254 Sed-Chr9:2032683 2.30E-109 wgd
Sed04g1778 Sed-Chr4:32417976 Sed09g0254 Sed-Chr9:2032683 5.40E-249 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0254 K01051 - csv:101221958 913.679