Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0255 ATGTCTAACAAGGCTGAAAGTGACAAAAAGAAGAAGAATATCGCCGTAGTAAGCGCCTCTTCTCTAATCCTCGTGGCAATGGTTGTCGCCGTTACCGTCGGTGTCAATGAATCCCCTCACGGAGCTCACACCGACGGTAACCATGATGGAGCCGGGGAAATTACGACAACTACGAAAGCAATTAAAACCATTTGTCAACCGACCGATTACAAACAAGATTGCGAGCAAAGCCTAATGGGCGAAGCTGGCAACACATCGGACCCAAGAGAGCTTGCAAAAGCGGGGTTGAAAATTGCCACGGAGAGGCTCAACGCGGCGATTAGAAACTCCACCACCCTTCAAGAACTCGCCAAGGAGCCAAGAACCAATCAAGCGTTGCAAAACTGTCGTGAGCTTCTAGAATATGCCATCGATGATTTAAACGAATCGTTCACTCGAATTGGCACGTTTGAAATGGGGAAACTAGACGAATTCGTCAATGATTTGAAGATCTGGCTGAGTGGAGCCCTCACGTACGAACAAACATGTTTGGATGGATTCGAAAACACGACGGGCGACGCGGGTGAGAAAATGAAGAACTTTTTGAAGTCGTCTCAGCAAATGACTAGCAACGGGCTAGCGATCGTGTCAGAATTGTCCACGATGTTGGGGTCGATGCAAGGGATGATGACGGGGCATCGTAAGTTGTTGGATGACGGCGAGGTGCCATCGTGGGTGAGCGAGGGAAAGAGGCGATTGATGCAGGTTGGAACGGCAGCGATGAAACCAGATATAGTGGTTGCACAGGATGGAAGTGGACAATACAAGACGATTAATGAAGCTTTGGTTGATGTGCCTAAAAAGAGCAATAAGACGTTCGTAATTTATGTGAAGGCTGGAATTTATAAAGAAATTGTTGTGATTCCTAAGGCTTTGACACATCTTACCATGTATGGTGATGGCCCCACCAAAACGGTCGTTACTGGTAATCTAAACTTTGTCGACGGTATTCAAACTTTCAAAACCGCTACCTTCTCTGCTATTGGAGCCAATTTCTTTTGCCGAGACATGGGATTCGAGAACACAGCAGGAGCAGCAAAGCACCAAGCAGTAGCACTACGAGTCCAATCCGACAGATCAATCTTCTACAATTGCCGAATGGACGGCTACCAAGACACTCTCTACGTGCAGGCCCATCGCCAGTTCTACCGCGACTGCACAATCAGCGGGACAATCGACTTCGTCTTCGGCAACTCTGCGGCCGTCTTCCAAAATTGCAACCTGGTGGTCCGCAAGCCAATGGACAACCAGCAATGCATCGTGACGGCGCAAGGCCGTCTCGAGCCCCTCGAACCGACAGCCCTAGTCTTCCAAAGTTGTCACTTCATGGGGGACCCAGCTTACTTGCCCCATAAAGCCATAAACAAAGCCTATTTGGGCCGACCTTGGAAGCAATATTCTCGAACAATTATTGTTGGGTCACAAATTGATGATTTGATCCAACCTGAAGGATGGTTGCCTTGGATGGGGACTTTTGGGTTGAACACTTTGTTTTATGCTGAAGTTGATAATAAAGGACTTGGAGCTGATAAGAGCAAAAGGGTAAAATGGGAAGGAATTAAAAATATTACACCAAAAGATGTTGAGGAATTTACTCCTAATAGGTTTATTGAAGGTGATGCTTGGATTAAGGATAAGGGAATTCCTTATGCTTCAGCAATGATGTAA 1707 46.81 MSNKAESDKKKKNIAVVSASSLILVAMVVAVTVGVNESPHGAHTDGNHDGAGEITTTTKAIKTICQPTDYKQDCEQSLMGEAGNTSDPRELAKAGLKIATERLNAAIRNSTTLQELAKEPRTNQALQNCRELLEYAIDDLNESFTRIGTFEMGKLDEFVNDLKIWLSGALTYEQTCLDGFENTTGDAGEKMKNFLKSSQQMTSNGLAIVSELSTMLGSMQGMMTGHRKLLDDGEVPSWVSEGKRRLMQVGTAAMKPDIVVAQDGSGQYKTINEALVDVPKKSNKTFVIYVKAGIYKEIVVIPKALTHLTMYGDGPTKTVVTGNLNFVDGIQTFKTATFSAIGANFFCRDMGFENTAGAAKHQAVALRVQSDRSIFYNCRMDGYQDTLYVQAHRQFYRDCTISGTIDFVFGNSAAVFQNCNLVVRKPMDNQQCIVTAQGRLEPLEPTALVFQSCHFMGDPAYLPHKAINKAYLGRPWKQYSRTIIVGSQIDDLIQPEGWLPWMGTFGLNTLFYAEVDNKGLGADKSKRVKWEGIKNITPKDVEEFTPNRFIEGDAWIKDKGIPYASAMM 568
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2036900 2038699 - Sed0023126.1 Sed09g0255 725019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0255 568 CDD PMEI-like_3 65 214 - -
Sed09g0255 568 Pfam Pectinesterase 257 553 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Sed09g0255 568 ProSitePatterns Pectinesterase signature 2. 401 410 IPR033131 -
Sed09g0255 568 Pfam Plant invertase/pectin methylesterase inhibitor 59 208 IPR006501 GO:0004857(InterPro)
Sed09g0255 568 NCBIfam pectinesterase inhibitor domain 56 212 IPR006501 GO:0004857(InterPro)
Sed09g0255 568 PANTHER PECTINESTERASE 13 557 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Sed09g0255 568 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 212 IPR035513 -
Sed09g0255 568 Gene3D - 251 567 IPR012334 -
Sed09g0255 568 SUPERFAMILY Pectin lyase-like 252 564 IPR011050 -
Sed09g0255 568 Gene3D Invertase/pectin methylesterase inhibitor family protein 55 213 IPR035513 -
Sed09g0255 568 FunFam Pectinesterase 251 567 - -
Sed09g0255 568 FunFam Pectinesterase 57 213 - -
Sed09g0255 568 SMART PMEI_2 56 208 IPR006501 GO:0004857(InterPro)
Sed09g0255 568 ProSitePatterns Pectinesterase signature 1. 282 301 IPR018040 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g1778 Sed-Chr4:32417976 Sed09g0255 Sed-Chr9:2036900 7.10E-249 dispersed
Sed07g2910 Sed-Chr7:43672743 Sed09g0255 Sed-Chr9:2036900 1.40E-130 dispersed
Sed09g0255 Sed-Chr9:2036900 Sed12g0805 Sed-Chr12:4944696 1.40E-175 dispersed
Sed09g0254 Sed-Chr9:2032683 Sed09g0255 Sed-Chr9:2036900 4.60E-288 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0255 K01051 - csv:101221958 907.131