Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0310 ATGGAAAATCCACCGGCGGAAGAGCTTCTGAGGAAGATCCAAGAGCTGGAAGAAGGTCAAGTTCATCTCAAGAAAGAGATCAACAAACTTCTCCTCTCTGAAACCGCCGTTGATTCCACCTCCGACAACCGTCGCCATCACCATCAGCGTTCGCAGTCCATATCGCCTCAGCGCTCTCGATTCGCGTGGAGGAGAGGCGCTGCTAATGGAGGTTTCGACTCCGCCGCCGCCGCGAGGAAAGCCTCATCGCCGTTTCGACATTCTTCTCCGCTTCAGAGAGAGAGTAGAACTCGAGAGCCGTTGAGTTCCGCCGCTGGATTCGGAACCGGCGGCGGACATGGCCCAGCCGCCGTCAATTTCACTAACAAACAGTATCTCAATATCTTGCAATCGATGGGACAGGCTGTTCATATTTTTGACCTGAATTATCGCATAATTTATTGGAACAAAGCTGCTGAAACTGTATATGGATATTCTGCTGTTGAAGCTCTCGGCCAGGATGTTGTTAAGCTTCTTGTAGATCCTGAAGATTTTGCGATTGCGAATGATGTAATTCATCGTGTTATGGATGGTGATAATTGGACTGGTCATTTCCCTCTAAAGAACAAGATGGGGCAAAAGTTTTTAGTTATTGCTACTAACTCTCCTTTCTACGATGACGGCGCATTGGTCGGGATTATTTGTGCTTCGACTGATTCGCGGGCATTTCAAGAATTGAAGATTCCCTTAGCAGGAGATTCTAAACAGCAGGATTCAGTAAGATCGAGAAGCACCGTTTCGACTAAACTTGGTCTTCCTCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCTAAGTTATCAAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTCCAAAATTCGCACCAGAGAAAATAGCTCAGATCGTGAAGGTGGAAGTGGAGATGGTTATCACTCTGATCGTGGTTTTCCGGATGCGGCTCTTTGCGATCATCGGGAGGATGCAAATTCGAGTGGAGCTAGCACGCCTCGGGGAGATTCTACTGCACATGGTGCATTTTCCCAGGTTGAAGAGAAATTATCCGGCAAACTAGTCAGGGAGTCCGGTGATGAGGTGAAAGGAAAACCTACCATTCAGAAGATATTATCCTCAAAAGCGGAAGAGTGGATTGCCAAGAAAGGCTTGTCGTGGCCGTGGAAAGGGACCGAGCAGGAAGGAGGATCTGAAGCAAGAGCAAGCCATTTTGTTGGGCCCTGGTTACAAAATGATCAAGAAGCTGAACCAGCTAATCCTAAGAGTTACTCTTCGTCTGGGAAACCAGAAATACAGCAAAAAGATGTTCATCGAGCAGCCAATAACGAGGCCTCGGGATCCTCGTCATCGTTCAATGTTAATAGCAATAGCAGTGCCAGTAGCAGCGGAAGCACCAGTAGTAGTGCTATCAACAAGGTTGACGCTGAAATAGACTGCTTGGATTATGAAATCTTGTGGGAAGACCTTACTATTGGGGAGCAAATAGGACAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGATGTTGCCATCAAAGTTTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAGACAGGAGGTATCTCTGATGAAAAAGCTTAGGCACCCTAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCGCCATCGTCACCGAATTCCTTCCACGTGGAAGTTTGTTTCGATTACTACAGAGGAGCACAAGCAAAATAGATTGGAGACGACGTATTCATATGGCTTTGGACATTGCACGGGGCATGAACTATCTCCATCGTTGCAATCCACCTATAATTCATCGAGATTTAAAATCCTCGAACTTGTTAATTGATAAAAACTGGACTGTGAAGGTTGGGGATTTTGGTCTATCTCGTCTTAAGCACGAGACTTATCTAACAACCAAGACCGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAACGAGCCCTCGGATGAGAAGTCCGACGTATACAGTTTTGGAGTCATATTGTGGGAGCTTGCAACCCAGAAGATTCCTTGGGAAAATCTCAATCCAATGCAGGTAATTGGTGCTGTGGGATTCATGAACCAACGACTAGAAATTCCCAAAGATGTGGATCCTCAATTGGTTTCTATAATTGAAAGCTGCTGGCACAGCGAACCAGCAAATCGACCATCATTCCAGGCACTAATAGAAAAGCTCAGAGAGCTGCAAAGGAAGTTCGCTATTCAATTACAAGCAGCTCGGGCGGGTGGGGATAATAACAACCCCAAAAAGGAAATGTAA 2322 46.17 MENPPAEELLRKIQELEEGQVHLKKEINKLLLSETAVDSTSDNRRHHHQRSQSISPQRSRFAWRRGAANGGFDSAAAARKASSPFRHSSPLQRESRTREPLSSAAGFGTGGGHGPAAVNFTNKQYLNILQSMGQAVHIFDLNYRIIYWNKAAETVYGYSAVEALGQDVVKLLVDPEDFAIANDVIHRVMDGDNWTGHFPLKNKMGQKFLVIATNSPFYDDGALVGIICASTDSRAFQELKIPLAGDSKQQDSVRSRSTVSTKLGLPPQQPLQVAIASKLSNLASKVSNKVKSKIRTRENSSDREGGSGDGYHSDRGFPDAALCDHREDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRESGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSEARASHFVGPWLQNDQEAEPANPKSYSSSGKPEIQQKDVHRAANNEASGSSSSFNVNSNSSASSSGSTSSSAINKVDAEIDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAIKVFSKQEYSDDVILSFRQEVSLMKKLRHPNILLFMGVVTSPQRLAIVTEFLPRGSLFRLLQRSTSKIDWRRRIHMALDIARGMNYLHRCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDVYSFGVILWELATQKIPWENLNPMQVIGAVGFMNQRLEIPKDVDPQLVSIIESCWHSEPANRPSFQALIEKLRELQRKFAIQLQAARAGGDNNNPKKEM 773
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2768530 2773649 + Sed0021682.1 Sed09g0310 725074
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0310 773 MobiDBLite consensus disorder prediction 288 370 - -
Sed09g0310 773 SMART pas_2 123 190 IPR000014 -
Sed09g0310 773 SMART serkin_6 494 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 MobiDBLite consensus disorder prediction 85 99 - -
Sed09g0310 773 Gene3D Transferase(Phosphotransferase) domain 1 573 758 - -
Sed09g0310 773 Pfam Protein tyrosine and serine/threonine kinase 494 746 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 Gene3D PAS domain 132 237 - -
Sed09g0310 773 PRINTS Tyrosine kinase catalytic domain signature 717 739 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 PRINTS Tyrosine kinase catalytic domain signature 568 581 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 PRINTS Tyrosine kinase catalytic domain signature 607 625 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 PRINTS Tyrosine kinase catalytic domain signature 673 695 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 PRINTS Tyrosine kinase catalytic domain signature 654 664 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 CDD PAS 132 232 IPR000014 -
Sed09g0310 773 SUPERFAMILY Protein kinase-like (PK-like) 479 744 IPR011009 -
Sed09g0310 773 MobiDBLite consensus disorder prediction 420 435 - -
Sed09g0310 773 FunFam PAS domain-containing protein tyrosine kinase family protein 572 763 - -
Sed09g0310 773 CDD STKc_MAP3K-like 500 746 - -
Sed09g0310 773 ProSitePatterns Serine/Threonine protein kinases active-site signature. 613 625 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 ProSiteProfiles PAS repeat profile. 121 192 IPR000014 -
Sed09g0310 773 FunFam PAS domain-containing protein tyrosine kinase 487 571 - -
Sed09g0310 773 Coils Coil 6 26 - -
Sed09g0310 773 MobiDBLite consensus disorder prediction 443 472 - -
Sed09g0310 773 ProSiteProfiles Protein kinase domain profile. 494 754 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Sed09g0310 773 SUPERFAMILY PYP-like sensor domain (PAS domain) 125 232 IPR035965 -
Sed09g0310 773 PANTHER SERINE-THREONINE PROTEIN KINASE 68 749 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Sed09g0310 773 MobiDBLite consensus disorder prediction 417 472 - -
Sed09g0310 773 MobiDBLite consensus disorder prediction 354 368 - -
Sed09g0310 773 MobiDBLite consensus disorder prediction 329 343 - -
Sed09g0310 773 MobiDBLite consensus disorder prediction 36 60 - -
Sed09g0310 773 Gene3D Phosphorylase Kinase; domain 1 487 571 - -
Sed09g0310 773 MobiDBLite consensus disorder prediction 73 108 - -
Sed09g0310 773 MobiDBLite consensus disorder prediction 291 310 - -
Sed09g0310 773 Pfam PAS domain 140 232 IPR000014 -
Sed09g0310 773 NCBIfam PAS domain S-box protein 123 231 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3095 Sed-Chr4:41915379 Sed09g0310 Sed-Chr9:2768530 0.00E+00 dispersed
Sed04g3096 Sed-Chr4:41916554 Sed09g0310 Sed-Chr9:2768530 7.3e-310 dispersed
Sed09g0310 Sed-Chr9:2768530 Sed13g1856 Sed-Chr13:23515876 1.00E-96 dispersed
Sed09g0310 Sed-Chr9:2768530 Sed11g1836 Sed-Chr11:33151905 6.00E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
79742 PF07714 PK_Tyr_Ser-Thr 2.00E-69 CL0016 Sed PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0310 - - - 0.0