Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0320 ATGAGAGCTTCAAATCATGGCTTCCCCCTCTTTTCTGTACTGCTTCTCAGTACTCTTCTTGCTCTTCAGCTCGTCAATGGTTCCCTCGTCTATAACTTCTATAAACGAAGCTGTCCCCGAGCGGAGAAAGTCGTGAGAGACGTCACTTTTCGACTCACTAAATCGAAGCGCGCTCTCGCCGCTCAACTTCTGCGAGTTCATTATCACGACTGCTTTGTTCAGGGATGTGATGCATCAATTCTACTAGATACTGTTGGAGGAATCCCATCCGAAAAGGATGCGAGGCCGAACCTATCACTGTTAGGTTTCGATGCCATTGACACCATCAAGTCGGAGGTTGATAAGGTTTGTCGGCCTGGAGTTGTTTCTTGCGCTGACATTCTTGCCCTTGCTGCTCGTGACTCTGTTTCTTTTCAGTTTAAAAACGAATCGTTGTGGCCAGTCTTAACCGGAAGAAGAGATGGAAGGGTCTCGAGATCATCGGATGTGACCGGAAATCTCCCGTCACCGTTCTCCAATTTCACGACTCTTAAGCAAATCTTCGACAAGAAAGGCCTTAGCGTGAACGATTTGGTGGTTTTATCAGGTGCTCATACAATTGGAGTAGCTCATTGTGGTGCATTCTCAAGGAGGCTCTACAACTTCACAGGCATAGGAGACTCAGATCCAACACTAAATCCACAATATGCAAAATTCCTTAGAAGAAAATGTCCAAATCCAGCCAATGCTTCAATTACAGTAGAAATGGATCCAGATAGTTCACGTTCATTTGACACTGATTATTTCAAAATTCTCAGACAGAACAAAGGTTTATTTCAATCCGACGCCGCGCTCCTCACCAACGCTTCGTCGATTTCGATAGTCAAGCGGTTGCAGAAGCCGGAAGCTTTCTTCCCGAGCTTTGCTCAGTCCATGTTGAAGATGGGAGCCATTGAAGTCCTCACTGGAACTGATGGTGAAATTAGGAATAAATGTCGTTTTGTTAATTAA 990 45.15 MRASNHGFPLFSVLLLSTLLALQLVNGSLVYNFYKRSCPRAEKVVRDVTFRLTKSKRALAAQLLRVHYHDCFVQGCDASILLDTVGGIPSEKDARPNLSLLGFDAIDTIKSEVDKVCRPGVVSCADILALAARDSVSFQFKNESLWPVLTGRRDGRVSRSSDVTGNLPSPFSNFTTLKQIFDKKGLSVNDLVVLSGAHTIGVAHCGAFSRRLYNFTGIGDSDPTLNPQYAKFLRRKCPNPANASITVEMDPDSSRSFDTDYFKILRQNKGLFQSDAALLTNASSISIVKRLQKPEAFFPSFAQSMLKMGAIEVLTGTDGEIRNKCRFVN 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2899926 2902340 + Sed0016340.1 Sed09g0320 725084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0320 329 PRINTS Plant peroxidase signature 189 201 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Plant peroxidase signature 303 316 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Plant peroxidase signature 121 131 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 SUPERFAMILY Heme-dependent peroxidases 29 329 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 ProSitePatterns Peroxidases proximal heme-ligand signature. 190 200 IPR019793 -
Sed09g0320 329 Gene3D - 32 329 - -
Sed09g0320 329 PRINTS Haem peroxidase superfamily signature 190 205 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Haem peroxidase superfamily signature 122 139 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Haem peroxidase superfamily signature 142 154 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 PANTHER PEROXIDASE 25-RELATED 30 325 IPR000823 GO:0004601(PANTHER)|GO:0004601(InterPro)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Sed09g0320 329 FunFam Peroxidase 168 308 - -
Sed09g0320 329 CDD secretory_peroxidase 29 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Sed09g0320 329 ProSiteProfiles Plant heme peroxidase family profile. 28 329 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 Pfam Peroxidase 45 292 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Sed09g0320 329 Gene3D Peroxidase, domain 2 168 308 - -
Sed09g0320 329 FunFam Peroxidase 32 180 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed04g3293 Sed-Chr4:43300867 Sed09g0320 Sed-Chr9:2899926 6.20E-68 dispersed
Sed09g0320 Sed-Chr9:2899926 Sed14g1158 Sed-Chr14:20964850 3.60E-67 dispersed
Sed09g0320 Sed-Chr9:2899926 Sed09g0321 Sed-Chr9:2909361 1.30E-146 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0320 K00430 - csv:101215642 452.21