Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0330 ATGGTTCCTCCAACTTTTGCTCCTTTTCATCTCTTCCCTCCAAACTTTGCTCTCATGAGTCATTTTGAGGGTTTCCATAATCATAACATCACTAACCATGAGGATCATCCATCCACAACTACACCAACCCACCAAACCCTCTCTACTTCCAAGGATCCAACCCTTTTTATCGACACGTCCTCGACCGTGGATACCACGGCCGAGGACAAGGGTTGGCTCCGTCTTAGCATCGGAGCCACCCCGACGGGTGATGCCCATCACCACAACAACAAACACCATCATCTCGATCCCCAACCGCCCCCGTTGGGGTTTGGATTGACCGAGCTTGACTTATTATCTGGCGGAGGCGGAGACGGCAGCGGTTTTAAATCAAACGAGTCGTTGGGAGTTGGAGATATTTCTCAACCTCCACAAGACCTTAATTGGACGTTTAGACCTATCTCCTCTCATTATAATTCTTCCCCTTCTAATTGTTCTTCTTTTGTACCTTACTTTTCTAGACCCTTTCATCTCCACCCGGGAGTTGACTTTGTCGCTGCCGCCACTGTCGCTGCCGGTCCAAGCATCGACTCCGAGGCCGTTAGGGTTATCGACCCTCCTCGTCGTCCTCATTCTGGGATTTGGTTTTCTCTTCAGCCATTGGAATCAAACCAAGGTAAACAACCGGCGTTGCCTCAAAGATCTAACAGCTACATGAGAATAAAGGATGGAAGGATGACAGTTCGATTATTAATCAAGTATTTGGTGAAAAAACTCAGACTGGATAGCGAATCAGAGGTAGAGATAAGGTGCAGAGGAGAAAAGCTTGAAGCTTGCTTGACAATGCAGCATATTAGAGATAACATATGGTGCTCTAAAGACTCTTCTTTTACTTTGCTTCCACATTCCTCAACCATTCATCACATTATGGTTCTTCACTATGCCACTCCTAATTCTCCTTCTTAA 945 46.35 MVPPTFAPFHLFPPNFALMSHFEGFHNHNITNHEDHPSTTTPTHQTLSTSKDPTLFIDTSSTVDTTAEDKGWLRLSIGATPTGDAHHHNNKHHHLDPQPPPLGFGLTELDLLSGGGGDGSGFKSNESLGVGDISQPPQDLNWTFRPISSHYNSSPSNCSSFVPYFSRPFHLHPGVDFVAAATVAAGPSIDSEAVRVIDPPRRPHSGIWFSLQPLESNQGKQPALPQRSNSYMRIKDGRMTVRLLIKYLVKKLRLDSESEVEIRCRGEKLEACLTMQHIRDNIWCSKDSSFTLLPHSSTIHHIMVLHYATPNSPS 314
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 2976707 2984211 - Sed0023362.1 Sed09g0330 725094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0330 314 PANTHER RING FINGER PROTEIN 38 309 IPR044171 GO:0007275(InterPro)
Sed09g0330 314 MobiDBLite consensus disorder prediction 29 53 - -
Sed09g0330 314 MobiDBLite consensus disorder prediction 34 53 - -
Sed09g0330 314 Gene3D - 201 308 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0330 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed02g0954 Sed-Chr2:47072914 Sed09g0330 Sed-Chr9:2976707 5.50E-44 dispersed
Sed02g0955 Sed-Chr2:47072914 Sed09g0330 Sed-Chr9:2976707 5.90E-44 dispersed
Sed05g1124 Sed-Chr5:11025043 Sed09g0330 Sed-Chr9:2976707 2.30E-07 dispersed
Sed09g0330 Sed-Chr9:2976707 Sed11g0223 Sed-Chr11:2032065 4.10E-12 dispersed
Sed09g0330 Sed-Chr9:2976707 Sed08g1606 Sed-Chr8:31192351 5.20E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1339 . . . . Bpe13g00826 . . . . . . . . . . . . . . . . . . . Cla06g00162 Cam06g0051 Cec06g0181 Cco06g0174 Clacu06g0175 Cmu06g0170 Cre06g0944 . . . . . . Chy11g01826 Cme11g02361 Blo02g00204 . . . . . . Bma06g01330 Sed09g0330 . . . . . . . . Bhi12g02396 Tan06g1449 Cmetu11g2046 . Hepe03g1165 . . . . . . . . . . . Chy07g01536 Cme07g01979
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002377 1 2 1 2 1 2 3 2 2 2 2 2 4 2 2 4 2 0 3 2 2 2 2 2 2 2 2 3 2 1 61