Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0339 ATGCCGTCTGAACTATTGGATTTGAAGGGTTTGTCTTCGTCTTCCTTCTTTTCCGACGATTTACGCTATTCGGATGAGGGGCAGGTTGGAGTTTGGAAGTCGGCTAGTATGACAAATCACCGTGCCAGCAACATGTCCGGTGCTTCATCATCTGTGGAAAAACTTTCAATTGGTGATTGCCGCCGAACAGAGAACTCGCTGGAAAATCATGATTCATTTCCTGTGAGAGATCAAAATGCAAGTCGTATCCTGAATAGACATGCTGTTGGAGCTGAAAGAACACCCAATTATTTTGCTCGAAGTAATGAAGTTAATATGATGAATTCTCAGTATGAGAGTAGTCTCTTCTCGAGTTCTTTATCGGATATATTTACCAGGAAGTTGCAATTTTCTCCCAGCAATGCACTGTATGGCCATTCTGTTGATACTGTTGCATCTCACTTCGAGGAGGAAGAGGAGGTTTTTGAGTCGCTCGAGGAATTGGAGGCCCAAACCATTGGAAACCTCCTCCCTGATGATGATGACTTGCTTTCTGGACTAGTAACTGATGGGCTTGATGGCTTGGTTGAAACAACTGGCGAAGATGATGCCGAGGACTTGGATTTCTTTAGCAATGTTGGAGGGATGGATTTGGGTGATGATAACTTATCTGCTGGACAGAAAAATTTGCTGGGGATGCATAACGGTGCTGTGGCTGGAGAGCATCCTCTAGGCGAACACCCTTCCAGGACACTGTTTGTGAGAAACATAAATAGCAATGTTGAAGATTCTGAATTGAAGGTCCTTTTTGAGCAATATGGAGACATTCACACTCTCTATACAGCATGCAAACATAGAGGGTTTGTTATGATATCCTATTATGATATTAGAGCTGCCCGTAACGCAATGAAAACACTCCAGAATAAACCGTTGAGACGAAGGAAGCTTGACATACATTATTCAATACCTAAGGACAATCCTTCTGAAAAAGATATTTACCAAGGGACACTTGTTGTTTTTAACCTTGAGTCTTCTGTTTCAAATGAAGAACTTCGTCAAATATTTGGTGTCTATGGAGAAATCAAGGAGATTCGTGAAGCTCCCCACAGAAGTCATCATAAATTCATTGAATTTTATGATCTCCGAGCTGCAGAGGCTGCTCTTTGTGCGTTAAACCAGAGTGATATAGCAGGGAAGCAGATAAAGCTTGAGCCAAGTCGTGCTGGCGGTGTGAGACGCAGTTTGGTGCAACAATTACATCCACAGTTGGACCGGGAAGATATTGGCCTCTATTTGCAACAGGGTAGCCCTCCTGTTAATGGCAGTACTAGCTTCTCTGGCTTAGTTCCTAGTGGGACTATCAAGTCTAGCAGCATGAGTAATGGATCTGTTCTTGGAGTACACTCTATGATGCGAGCTCCGTCTTTGGAGACCGGGTTGCATTATGGGATATCTTCTAGTGTTCCTAGCAGCTTACCTTCTGTAATGAGATCTGAAACAATTGGCAACCAATCTGGCTTCATTGACTCCGCTCATTCACCTTCACAACTAAAGCTGGGTATCCGGGCGGCTTCAGCTATTCATCCTCATTCACTTCCAGATGATTCTGATGGTTTGAACAACATTGTTCAATGCAATTCTATGAATCCTATTGGCGGAAACAACAGTCTACGACCACCTGAAAGAACTGAGACCAGGCAGCTAGTGAACTGTAATGGTCGCTCTATTGAATTGAATGAAGATGTTTTTGCATCTGGTGGTAACAGAACTCGCCCCATTCCTGGACCCCATTATACATGGGGAAGCAACTCATACCGGCCCCAGCCTCCAGCTCCCGGCGTCGTATGGCCGAATTCTCCATCTTATATGAATGGAATTTCTGCTGCCCATACCCCAACCCAAGTCCATGGAGTTCCAAGATCAGTATCTCATTTGATGCACTCAGTTCTACCCATGAATAATCACCACGTCGGATCAGCACCAACTGTTAATCCTTCTATTTGGGATAGACAACATGCTTATGCTGGGGAATTGTCAAAAGCCTCCGGCTTTCATTCAGGTTCTATAGGGAATATGAATTTGCCTAACAGTTCACCACAGGCCATGGATTTTTTCTCTCATATCTTCCCACGAGTTGGTGGACATTCTCTGGAGCTTCCTATCCCCCAAAGGAATGTCGGACTTCAATCACTTCATCAGCAGTGCATGGTTTTTCCGGGACGAGGTCAAATGGTTCCAGTGATGAATTCATTTGATTCTTCAAATGAACGCGGAAGAAGCCGGAGAAATGAAGCATCCTCTAATCAAGCAGAAAAGAAGCAATATGAACTTGATCTTGATCGCATAATGAGGGGTGAAGACAATCGTACTACGCTTATGATAAAGAACATTCCTAACAAATATACATCAAAGATGCTTTTGGCTGCTATTGATGAACGCCATCGAGGAACTTATGATTTCATCTATCTGCCTATTGACTTTAAGAACAAATGTAACGTGGGATATGCGTTCATTAACATGATTGATCCTAGCCTTATCATTCCATTCTGTGAGGCATTTAATGGCAAAAAGTGGGAGAAATTCAACAGTGAGAAGGTGGCATCACTTGCATATGGTCGCATACAGGGAAAAGCTGCTCTCATCGCACATTTCCAGAATTCGAGCTTAATGAATGAAGATAAGCGATGTCGACCAATCCTTTTCAACACGGATGGTCCCAATGCAGGTGATCAGGTATGA 2718 43.45 MPSELLDLKGLSSSSFFSDDLRYSDEGQVGVWKSASMTNHRASNMSGASSSVEKLSIGDCRRTENSLENHDSFPVRDQNASRILNRHAVGAERTPNYFARSNEVNMMNSQYESSLFSSSLSDIFTRKLQFSPSNALYGHSVDTVASHFEEEEEVFESLEELEAQTIGNLLPDDDDLLSGLVTDGLDGLVETTGEDDAEDLDFFSNVGGMDLGDDNLSAGQKNLLGMHNGAVAGEHPLGEHPSRTLFVRNINSNVEDSELKVLFEQYGDIHTLYTACKHRGFVMISYYDIRAARNAMKTLQNKPLRRRKLDIHYSIPKDNPSEKDIYQGTLVVFNLESSVSNEELRQIFGVYGEIKEIREAPHRSHHKFIEFYDLRAAEAALCALNQSDIAGKQIKLEPSRAGGVRRSLVQQLHPQLDREDIGLYLQQGSPPVNGSTSFSGLVPSGTIKSSSMSNGSVLGVHSMMRAPSLETGLHYGISSSVPSSLPSVMRSETIGNQSGFIDSAHSPSQLKLGIRAASAIHPHSLPDDSDGLNNIVQCNSMNPIGGNNSLRPPERTETRQLVNCNGRSIELNEDVFASGGNRTRPIPGPHYTWGSNSYRPQPPAPGVVWPNSPSYMNGISAAHTPTQVHGVPRSVSHLMHSVLPMNNHHVGSAPTVNPSIWDRQHAYAGELSKASGFHSGSIGNMNLPNSSPQAMDFFSHIFPRVGGHSLELPIPQRNVGLQSLHQQCMVFPGRGQMVPVMNSFDSSNERGRSRRNEASSNQAEKKQYELDLDRIMRGEDNRTTLMIKNIPNKYTSKMLLAAIDERHRGTYDFIYLPIDFKNKCNVGYAFINMIDPSLIIPFCEAFNGKKWEKFNSEKVASLAYGRIQGKAALIAHFQNSSLMNEDKRCRPILFNTDGPNAGDQV 905
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3071159 3080277 + Sed0023962.2 Sed09g0339 725103

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0339 905 SUPERFAMILY RNA-binding domain, RBD 784 868 IPR035979 GO:0003676(InterPro)
Sed09g0339 905 SUPERFAMILY RNA-binding domain, RBD 240 399 IPR035979 GO:0003676(InterPro)
Sed09g0339 905 MobiDBLite consensus disorder prediction 748 765 - -
Sed09g0339 905 CDD RRM3_MEI2_like 785 870 IPR034454 -
Sed09g0339 905 Pfam RNA recognition motif 330 395 IPR000504 GO:0003723(InterPro)
Sed09g0339 905 Pfam RNA recognition motif 245 309 IPR000504 GO:0003723(InterPro)
Sed09g0339 905 FunFam Protein MEI2-like 1 327 422 - -
Sed09g0339 905 Pfam RNA recognition motif 2 782 878 IPR007201 -
Sed09g0339 905 PANTHER RNA RECOGNITION MOTIF-CONTAINING 113 901 - GO:0045836(PANTHER)
Sed09g0339 905 CDD RRM2_MEI2_like 327 397 - -
Sed09g0339 905 Gene3D - 327 416 IPR012677 -
Sed09g0339 905 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 328 401 IPR000504 GO:0003723(InterPro)
Sed09g0339 905 Gene3D - 235 326 IPR012677 -
Sed09g0339 905 SMART rrm1_1 784 860 IPR000504 GO:0003723(InterPro)
Sed09g0339 905 SMART rrm1_1 329 397 IPR000504 GO:0003723(InterPro)
Sed09g0339 905 SMART rrm1_1 244 312 IPR000504 GO:0003723(InterPro)
Sed09g0339 905 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 316 IPR000504 GO:0003723(InterPro)
Sed09g0339 905 FunFam MEI2-like protein 5 isoform 2 232 326 - -
Sed09g0339 905 CDD RRM1_MEI2_like 242 318 IPR034453 -
Sed09g0339 905 MobiDBLite consensus disorder prediction 741 765 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0339 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0139 Sed-Chr7:1276692 Sed09g0339 Sed-Chr9:3071159 0.00E+00 dispersed
Sed09g0339 Sed-Chr9:3071159 Sed10g0166 Sed-Chr10:1038822 2.50E-163 dispersed
Sed09g0338 Sed-Chr9:3071159 Sed09g0339 Sed-Chr9:3071159 0.00E+00 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1348 Blo01g00156 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00157 Cam06g0059 Cec06g0173 Cco06g0168 Clacu06g0167 Cmu06g0163 Cre06g0939 Cone14ag0649 Cone15ag0659 . . . . Chy11g01832 Cme11g02368 . . . . . . . . Sed09g0339 . . . . . . Cpe17g00944 . Bhi12g02387 Tan06g1439 Cmetu11g1451 . Hepe03g1175 . . . . . . . . . Lsi09g01769 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003734 3 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 46