Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sed09g0355 | ATGTCTGACGGCCAAGAAACTGATAAGAACATTGAGATATGGAAGATTAAGAAGTTGATTAAAGCACTTGAAGCTGCTAGAGGAAATGGGACTAGCATGATTTCTCTCATCATGCCTCCGCGTGATCAAGTATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAATATTAAGAGTAGGGTGAATCGCCAATCTGTTTTGGGCGCTATCACGTCTGCTCAGCAGAGGCTCAAGCTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTTTATACTGGAACAATTGTGACTGAAGATGGAAAAGAAAAGAAAGTCACTATTGATTTTGAGCCTTTCAAGCCTATTAATGCGTCGCTCTATCTCTGCGACAATAAGTTCCATACGGAAGCCCTGAATGAGCTTTTGGAATCTGATGATAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGTACATTGAGTGGTAATACACGCGAGGTCCTTCACAAATTTAGCGTCGACCTTCCTAAGAAACATGGTAGAGGAGGTCAATCAGCGCTTAGGTTTGCACGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAATTCTATATTAATCCTGCCACTAGTCAACCTAATGTTTCAGGATTGATATTGGCTGGATCAGCCGACTTTAAGACAGAGCTCAGTCAATCGGACATGTTTGATCCTCGTCTTCAGGCGAAAATACTTAATGTGGTTGATGTCTCTTATGGAGGGGAAAATGGATTTAATCAGGCTATCGAATTGTCCTCTGAGATTTTGTCGAATGTTAAATTTATCCAGGAGAAGCGGTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACTGGGAAATATGTTTTTGGTGTTGATGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAGACTCTCATTGTTTGGGAAAATTTGGATATCAATAGGTATGTATTAAAGAATGTTGCCACTGGTGAGATTCTTATTAAGCATTTGAATAAGGAACAGGAAGCCAATCAGAGCAACTTCCGTGACCCCGTCAGCGCTGCCGAGTTGGAGGTTCAAGAAAAGTTGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTCGGTTGCACACTGGAGTTCGTAACCAACAAATCACAGGAAGGGTCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTCGACGAGCTATCTGACGGAGAAGAATACGATGATTCTGAATAA | 1311 | 42.56 | MSDGQETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNVATGEILIKHLNKEQEANQSNFRDPVSAAELEVQEKLALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYDDSE | 436 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 3219978 | 3222632 | + | Sed0022800.1 | Sed09g0355 | 725119 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sed09g0355 | 436 | SUPERFAMILY | Translational machinery components | 142 | 276 | - | - | |
Sed09g0355 | 436 | SMART | eRF1_1_2 | 4 | 140 | IPR005140 | - | |
Sed09g0355 | 436 | FunFam | Peptide chain release factor subunit 1 | 279 | 436 | - | - | |
Sed09g0355 | 436 | SUPERFAMILY | L30e-like | 278 | 420 | IPR029064 | - | |
Sed09g0355 | 436 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 2 | 135 | - | - | |
Sed09g0355 | 436 | Pfam | eRF1 domain 2 | 144 | 277 | IPR005141 | - | |
Sed09g0355 | 436 | NCBIfam | peptide chain release factor aRF-1 | 12 | 417 | IPR004403 | GO:0003747(InterPro)|GO:0006415(InterPro) | |
Sed09g0355 | 436 | FunFam | Eukaryotic peptide chain release factor subunit 1 | 136 | 277 | - | - | |
Sed09g0355 | 436 | Gene3D | - | 279 | 436 | IPR029064 | - | |
Sed09g0355 | 436 | PANTHER | PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 | 2 | 427 | IPR004403 | GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER) | |
Sed09g0355 | 436 | Pfam | eRF1 domain 3 | 281 | 418 | IPR005142 | - | |
Sed09g0355 | 436 | Gene3D | eRF1 domain 1 | 2 | 135 | IPR024049 | - | |
Sed09g0355 | 436 | SUPERFAMILY | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | 6 | 140 | IPR024049 | - | |
Sed09g0355 | 436 | Pfam | eRF1 domain 1 | 17 | 139 | IPR005140 | - | |
Sed09g0355 | 436 | Gene3D | eRF1 domain 2 | 136 | 277 | IPR042226 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Sed07g0149 | Sed-Chr7:1340001 | Sed09g0355 | Sed-Chr9:3219978 | 7.20E-241 | dispersed | |
Sed09g0355 | Sed-Chr9:3219978 | Sed09g0357 | Sed-Chr9:3219978 | 4.20E-249 | dispersed | |
Sed09g0355 | Sed-Chr9:3219978 | Sed09g0356 | Sed-Chr9:3219978 | 4.20E-249 | tandem | |
Sed07g0148 | Sed-Chr7:1340001 | Sed09g0355 | Sed-Chr9:3219978 | 7.20E-241 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sed09g0355 | K03265 | - | csv:101203556 | 826.239 |