Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0355 ATGTCTGACGGCCAAGAAACTGATAAGAACATTGAGATATGGAAGATTAAGAAGTTGATTAAAGCACTTGAAGCTGCTAGAGGAAATGGGACTAGCATGATTTCTCTCATCATGCCTCCGCGTGATCAAGTATCTCGTGTTACTAAGATGCTTGGTGATGAATTTGGAACTGCTTCGAATATTAAGAGTAGGGTGAATCGCCAATCTGTTTTGGGCGCTATCACGTCTGCTCAGCAGAGGCTCAAGCTGTATAACAAGGTTCCTCCAAATGGGCTTGTGCTTTATACTGGAACAATTGTGACTGAAGATGGAAAAGAAAAGAAAGTCACTATTGATTTTGAGCCTTTCAAGCCTATTAATGCGTCGCTCTATCTCTGCGACAATAAGTTCCATACGGAAGCCCTGAATGAGCTTTTGGAATCTGATGATAAGTTTGGCTTCATTGTCATGGATGGTAATGGAACACTCTTTGGTACATTGAGTGGTAATACACGCGAGGTCCTTCACAAATTTAGCGTCGACCTTCCTAAGAAACATGGTAGAGGAGGTCAATCAGCGCTTAGGTTTGCACGTCTTCGGATGGAGAAGCGGCACAACTATGTGAGGAAAACAGCAGAGCTTGCAACCCAATTCTATATTAATCCTGCCACTAGTCAACCTAATGTTTCAGGATTGATATTGGCTGGATCAGCCGACTTTAAGACAGAGCTCAGTCAATCGGACATGTTTGATCCTCGTCTTCAGGCGAAAATACTTAATGTGGTTGATGTCTCTTATGGAGGGGAAAATGGATTTAATCAGGCTATCGAATTGTCCTCTGAGATTTTGTCGAATGTTAAATTTATCCAGGAGAAGCGGTTGATTGGAAAATACTTTGAAGAGATTAGCCAGGACACTGGGAAATATGTTTTTGGTGTTGATGACACACTGAAAGCTCTGGAGATGGGTGCTGTTGAGACTCTCATTGTTTGGGAAAATTTGGATATCAATAGGTATGTATTAAAGAATGTTGCCACTGGTGAGATTCTTATTAAGCATTTGAATAAGGAACAGGAAGCCAATCAGAGCAACTTCCGTGACCCCGTCAGCGCTGCCGAGTTGGAGGTTCAAGAAAAGTTGGCCTTGCTGGAATGGTTTGCAAACGAGTACAAGAAGTTCGGTTGCACACTGGAGTTCGTAACCAACAAATCACAGGAAGGGTCACAGTTCTGCAGAGGTTTTGGTGGTATTGGAGGAATTCTTCGTTACCAGCTTGACATAAGATCGTTCGACGAGCTATCTGACGGAGAAGAATACGATGATTCTGAATAA 1311 42.56 MSDGQETDKNIEIWKIKKLIKALEAARGNGTSMISLIMPPRDQVSRVTKMLGDEFGTASNIKSRVNRQSVLGAITSAQQRLKLYNKVPPNGLVLYTGTIVTEDGKEKKVTIDFEPFKPINASLYLCDNKFHTEALNELLESDDKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSSEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALEMGAVETLIVWENLDINRYVLKNVATGEILIKHLNKEQEANQSNFRDPVSAAELEVQEKLALLEWFANEYKKFGCTLEFVTNKSQEGSQFCRGFGGIGGILRYQLDIRSFDELSDGEEYDDSE 436
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3219978 3222632 + Sed0022800.1 Sed09g0355 725119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0355 436 SUPERFAMILY Translational machinery components 142 276 - -
Sed09g0355 436 SMART eRF1_1_2 4 140 IPR005140 -
Sed09g0355 436 FunFam Peptide chain release factor subunit 1 279 436 - -
Sed09g0355 436 SUPERFAMILY L30e-like 278 420 IPR029064 -
Sed09g0355 436 FunFam Eukaryotic peptide chain release factor subunit 1 2 135 - -
Sed09g0355 436 Pfam eRF1 domain 2 144 277 IPR005141 -
Sed09g0355 436 NCBIfam peptide chain release factor aRF-1 12 417 IPR004403 GO:0003747(InterPro)|GO:0006415(InterPro)
Sed09g0355 436 FunFam Eukaryotic peptide chain release factor subunit 1 136 277 - -
Sed09g0355 436 Gene3D - 279 436 IPR029064 -
Sed09g0355 436 PANTHER PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 2 427 IPR004403 GO:0002184(PANTHER)|GO:0003747(InterPro)|GO:0005829(PANTHER)|GO:0006415(InterPro)|GO:0016149(PANTHER)|GO:0018444(PANTHER)|GO:1990825(PANTHER)
Sed09g0355 436 Pfam eRF1 domain 3 281 418 IPR005142 -
Sed09g0355 436 Gene3D eRF1 domain 1 2 135 IPR024049 -
Sed09g0355 436 SUPERFAMILY N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 6 140 IPR024049 -
Sed09g0355 436 Pfam eRF1 domain 1 17 139 IPR005140 -
Sed09g0355 436 Gene3D eRF1 domain 2 136 277 IPR042226 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0149 Sed-Chr7:1340001 Sed09g0355 Sed-Chr9:3219978 7.20E-241 dispersed
Sed09g0355 Sed-Chr9:3219978 Sed09g0357 Sed-Chr9:3219978 4.20E-249 dispersed
Sed09g0355 Sed-Chr9:3219978 Sed09g0356 Sed-Chr9:3219978 4.20E-249 tandem
Sed07g0148 Sed-Chr7:1340001 Sed09g0355 Sed-Chr9:3219978 7.20E-241 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0355 K03265 - csv:101203556 826.239