Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0359 ATGGCCGACGGCAAGTTCGATCTCCCCGACGATCTTCTCTCCTCCCGCCCCTCCGATCACTCCTGGACGCCCAAAGTGGAAGCTTCTGGAGGGAATGTTGACGAGAAGGTGCTCACGGCTTTCCTTGATGATTCCAAAGACCAAGTGGCATCAGAGAACAACATACCATTGTCCCCTCAGTGGCTATATGCCAAACCAAGTGAAACTAAGATGGAAGTGCGTGCTCCAACACCAGTGTCTCTTGTGAACTCTACTGATCTCAATCAGAAAGAGGTCTGGCGCCCAGATGTTTCTGAGGACAAAAAGGATTGGAGGAAAAACACTTCTGATAATGAAAGTGGGCGACGTTGGCGAGAGGAAGAGCGAGAAACTGGCTTACTTGGTGGTCGTCGTAGAAAAACTGAGCGCCGCATTGATAACATATCAACCAAGGAGACAATGGAGAGTAGAATCTTGCCTAGTTCAGACAGATGGCATGATGGTCGTACTTCCGGTCATGATACACGACGTGACAACAAATGGACATTGAGGTGGGGACCTGATGACAAAGAAAAGGAACCACGGATGGACAAGCGGTCAGATGCTGATAAGGAAGATGTTCGCAATGACAGTCAATCAGTGGGTGGCAATCGCCCTGCTTCAGACCGTGACTCTGATTCACGTGATAAATGGAGGCCTCGCCATAGAATGGAAGGCCATTCTGTTGGCTCAAATTCCTCTCGTGCTGCACCTGGTTTTTCACTAGAGAAAGGGCGGGGAGATGGAGGCTCTAGTTTAGGATTTACAATTGGACGAGGAAGGTCAAATACTATTGGGAGATCATCTACTGGTCCTATTGGTGGAGTTCCACTCTTGGATAAGATTGAAAATGTTCTTGGAAAACCAAGTTACTCATCTTGTGCCTTTTTTTACCCTAGGGGTAAGCTTCTCGACATATATAGGAGGCAGAAAATTGATCCATTATTATCAGCTCTGCCTGATGATATGGATGAATTATCACCTGTGACTCAACCTAGTGCTGTAAAACCATTAGCTTTTGTTTCTCCGGATGCTGAGGAGGAGTCTATCCTTGGTGACATATGGAAGGGAAAGATCACAAATAGCGGGGTTGTATACATTCCTCAGAAAAAGGAGAAGCCAACTGAAAGTAGTTTAGGAGATGTAGACTCTGTAGAGGAAAATCAGACTGGACTGGACTCAACTTTAATATCTGAGAATGTAGCAGCAACTCCGTATGACGATATTGATAATGCCACTCAAGAAGTAAAAAATGATGATGCATTCCAAGATACTAGTGACAGGAGCATTTGGAGTTATCCTTCAATGGGAGATGTTATAGATGGTAAATATAACAGCCATAAGGAAGAGCCGAAAAGGTCCATTGCAGCCATTTCTATGTCAAACGCTGATGGATTGGCCCACACAGTTTCTACAGTAGCTTCCCAACGTGGGATGGAGATTGGTGGTGGACGCCCCGTTACTCAGCTAAATGTTGGTGTGAATGGGCAAACAGATTCTGATCCAAGAAAGTCCCATGACTTTGATGAAATTGAGTTTGCAAATTCTTTTGATGTCAGGTCTAATCTCCCTGATGATCCTCGTTCTAATTTCTTTATTCCCTTTTCTGAGCAAAATCCAATTAAAAGTTCTGATGAGAAATTTGAGGAGTGGAGTTTGTTCTATCTTGATCCTCAAGGGGTTATTCAGGGGCCGTTTATCGGGGCTGACATTATCTTGTGGTATGAACAGGGTTTCTTTGGGTTGGACCTGCCTGTTCGCTTGGCAGATGCCCCTGAAGGAACCCCATTCAGTGAGTTGGGGGTGGTTATGCCACATTTGAAAGTTAGAGAGGGAAGTGTTGATTGTGCTGATACGAAATCTCTTTCGGGCCAGTCTGGTGCCTCAGGAGGAATTATGGAGACCAATTTACCTTATCAAGCTTTTGATATGAATGATGCATCCACAACAAATGAGCTTCATCGGTCATGGGCTGAATTACATAGCCACTCCAATCAACAGATTCCATCTGGAATGTCTGAGACTGAAGCGCCACTTCATTTACATTCCAAGGGTCAAGTTTTTCATGATGTTATTGCACAGGATGAAGAAATTGTGTTTTCTGGAAGGCCTGGAACCGCCGGTTATCAAATTCCAAACGCTTCAAGTTCCATCACCAAACCTTCTCTTCGGAATGAATTTACTGATTGCAATGTGCCTGTTCAGAATGAAAATAAGTTGCATCCTTTTGGATTGCTATGGTCTGAGCTGGAAAGTACGAACATGAAACCCGTGGAAGTCACCAATTCAAAACATGCTAAGTCAGTTAACGTTCCTTCAAGCATGGGAAGAACTGGACCATTAGCTGGGAAGGCGGAAGCATCTCTCAATGCAGAAACTTGGCTTGATGTTTACAGAAGAAGTATGCATTCTGACCAGAGTGTATACCAGGATATGAATGTCGCACATTCTCTTCCGCGTATAGAACAAGAATCTAATAGGTTCGATTTAGCAGATCAACTCATGACGCATCAATATCATCAGGCACTTCAACAGCAGAATTTGTCGTCTCACTCTAATGAAGCTACCTTAGATCATCATATGCAACAACGGAATCTTATTCACCAGCAGCAGCTGTTGGCTAACAGAAGTACACCCGACCTTGATCATCTATTGAACCTACAAATGCAACAGCAACAGCAGCAGCAGCAGATGCAGTTACAGCGTCAACTACAGCAGCAGCAGTTGCATCAGCAGCAAAAGCTTTTGCAGGAACAACATCAATCCCAAGTCCAACAGGTGCTGCTTGAACAGTTGTTGCGTCGAAAAATGCATGATGCAGGCCTTGGCCAGTCACACATGGATCCAATTAGAGCTAATAATACTTTTGATCAGGCGATACTGGATCAATGTCTTTTACATGAGCTACAGCAACATTCTCATCATCAACAAAGATCTGTTGATCCATCTTTTGAGCAACTTATTAAAACAAAGTTTGGTCACTTCCCGCCACAACAAGAACATCAAAGAGATTTGTCTGAACTATTATCTCTGGCTCAGCATGGACATATCCAATCATTGGATCATCAAGCTCTCCAGCAGGAAATTCTACAGTCAAGACAGTTGTCTATGGCATTAAGGCAAAGGGCCAATATGGATGACAAGAGACATGTTGGTGGTTCTATCTGGCAAGAGGATGAGGCTGATCAGCCATTTTTCAGAGGACATGCTGGTGCACAACGCTTACCGCCATCTTCAGGGTATGAATTATACCAGCAGCAACAGAGGCAATCTCATGTAGAGCAGCAGCTGAATCACCTTGAGCGCAATCTTTCATTTCAAGATCGGTTAAGAGGATTTTATGAGGCATCTTCACTTCCACTTGAGAGATCAATATCATATCCCGATGTTGCTCAGGGGATGAATCTGGATGTTGTTAATGCTATGGCTCGTGCTCGTGCTTTAGAATTGCAAGAATCCAGTGCTCATAATCTAACTGGTGGTCAATTGGGGCAATATGCACCTGCCACCATTCAACAGAATCCTCACCGCTCTCTAGTCAATAACCAATTTCATGTTTCACATTTTGATGGAACTGAAGGCAGCTGGTCTGAGAAAAATGACCGACTTGGAAATGATTGGATGGAGTCTCGCATTCAGCAGCTACATATCAATGCTGAGCAACAGAAAAGGGAGTTGGAAGCTAAAATGGTTTCTGAAGATCCAACTTTATGGATGTCAGATGGGCTTAATGATGAGAAGTCAAAGCAGTTATTAATGGAGCTTCTCAATCAGAAATCTGTTCATCAACCAACTGAATCCTTGGATGCCGGAAATGGAGCATCGTTCAATAGAGCATCATCTGGCCTCTATTCTGGATCGGGGTCTCTTGATCAATCATTCGTTCTTCATTCAGGAAAGGAAAGAGGTTTGAACAGCACATTTTCAGTGGGGTCCTATGGTTCTAATTATGAACCGCTGCAAGATGAGTATCCTGGGAGCTTGGCCAGCAATGAAAAGGTCCCATACAGGTTGGATTCTGGCTCTGTTGTCAAAGGAGCATCAATTTTGGCTGGCGCCAATGGGGCGATTCACAGTTCTAGTTCCAGCATGGCTGGTAACCTTTCTATGAATAAAGACGTCTTAGAGGAGGGTAGAGCTCGAGGATTGAAAGGTGAGGGTTTGATGAAAACTCAAGCTTTTCAAATTCAAGAAAGCATGCTAGATCAAGTGGCATCTGCCGATCATGGGGATTTTTTGATGGATACCCATTCCCTTAGTCGCCATTCTTCTCTTGGTTCTGCTGGCTTTCACAATGAAAAGATTGGCAATTCATTCCCGGAAGAGATTCCTAAAGATACGGTGACCATTCACAGTAAAGACAACACTTTATTGAAACGCCCTCCTGTCTCGCGCGCTTCCGCATCCCAGGATGGATTGTCTGTTCTGATTAATGATCCGGTTCTCAGAGGGGGGAAAAATTCAGATGGAGGACGACCGGACCCAGCAGGTATCTTGGCGAGCCAAGAAAACATGGCTGCTGTGAAGAAAGAGATGCGTTTTCGGCGCTCTTCTTCTTGCAGCGACAACGAGGTATCAGAGACTTCTTTTATCGACATGCTGAAGAAGACAGCTCCACAAGAAGTAGTCCACTCGACCACGACCGGGGTTTCAGAGCCATCCGATGGAATGCAAGGAGGGAAAGGCGGGAAAAAGAAAGGGAAGAAGGGGAGACAAATAGACCCGGCACTACTCGGTTTCAAAGTCACGAGCAACCGAATCATGATGGGTGAAATCCAACGCTTAGACGATTAG 4812 44.66 MADGKFDLPDDLLSSRPSDHSWTPKVEASGGNVDEKVLTAFLDDSKDQVASENNIPLSPQWLYAKPSETKMEVRAPTPVSLVNSTDLNQKEVWRPDVSEDKKDWRKNTSDNESGRRWREEERETGLLGGRRRKTERRIDNISTKETMESRILPSSDRWHDGRTSGHDTRRDNKWTLRWGPDDKEKEPRMDKRSDADKEDVRNDSQSVGGNRPASDRDSDSRDKWRPRHRMEGHSVGSNSSRAAPGFSLEKGRGDGGSSLGFTIGRGRSNTIGRSSTGPIGGVPLLDKIENVLGKPSYSSCAFFYPRGKLLDIYRRQKIDPLLSALPDDMDELSPVTQPSAVKPLAFVSPDAEEESILGDIWKGKITNSGVVYIPQKKEKPTESSLGDVDSVEENQTGLDSTLISENVAATPYDDIDNATQEVKNDDAFQDTSDRSIWSYPSMGDVIDGKYNSHKEEPKRSIAAISMSNADGLAHTVSTVASQRGMEIGGGRPVTQLNVGVNGQTDSDPRKSHDFDEIEFANSFDVRSNLPDDPRSNFFIPFSEQNPIKSSDEKFEEWSLFYLDPQGVIQGPFIGADIILWYEQGFFGLDLPVRLADAPEGTPFSELGVVMPHLKVREGSVDCADTKSLSGQSGASGGIMETNLPYQAFDMNDASTTNELHRSWAELHSHSNQQIPSGMSETEAPLHLHSKGQVFHDVIAQDEEIVFSGRPGTAGYQIPNASSSITKPSLRNEFTDCNVPVQNENKLHPFGLLWSELESTNMKPVEVTNSKHAKSVNVPSSMGRTGPLAGKAEASLNAETWLDVYRRSMHSDQSVYQDMNVAHSLPRIEQESNRFDLADQLMTHQYHQALQQQNLSSHSNEATLDHHMQQRNLIHQQQLLANRSTPDLDHLLNLQMQQQQQQQQMQLQRQLQQQQLHQQQKLLQEQHQSQVQQVLLEQLLRRKMHDAGLGQSHMDPIRANNTFDQAILDQCLLHELQQHSHHQQRSVDPSFEQLIKTKFGHFPPQQEHQRDLSELLSLAQHGHIQSLDHQALQQEILQSRQLSMALRQRANMDDKRHVGGSIWQEDEADQPFFRGHAGAQRLPPSSGYELYQQQQRQSHVEQQLNHLERNLSFQDRLRGFYEASSLPLERSISYPDVAQGMNLDVVNAMARARALELQESSAHNLTGGQLGQYAPATIQQNPHRSLVNNQFHVSHFDGTEGSWSEKNDRLGNDWMESRIQQLHINAEQQKRELEAKMVSEDPTLWMSDGLNDEKSKQLLMELLNQKSVHQPTESLDAGNGASFNRASSGLYSGSGSLDQSFVLHSGKERGLNSTFSVGSYGSNYEPLQDEYPGSLASNEKVPYRLDSGSVVKGASILAGANGAIHSSSSSMAGNLSMNKDVLEEGRARGLKGEGLMKTQAFQIQESMLDQVASADHGDFLMDTHSLSRHSSLGSAGFHNEKIGNSFPEEIPKDTVTIHSKDNTLLKRPPVSRASASQDGLSVLINDPVLRGGKNSDGGRPDPAGILASQENMAAVKKEMRFRRSSSCSDNEVSETSFIDMLKKTAPQEVVHSTTTGVSEPSDGMQGGKGGKKKGKKGRQIDPALLGFKVTSNRIMMGEIQRLDD 1603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3233500 3243597 + Sed0008887.1 Sed09g0359 725123

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0359 1603 MobiDBLite consensus disorder prediction 214 234 - -
Sed09g0359 1603 Coils Coil 1089 1109 - -
Sed09g0359 1603 SUPERFAMILY GYF domain 554 606 IPR035445 -
Sed09g0359 1603 Coils Coil 1211 1235 - -
Sed09g0359 1603 MobiDBLite consensus disorder prediction 75 257 - -
Sed09g0359 1603 Gene3D - 543 627 IPR035445 -
Sed09g0359 1603 ProSiteProfiles GYF domain profile. 556 607 IPR003169 GO:0005515(InterPro)
Sed09g0359 1603 SMART gyf_5 557 612 IPR003169 GO:0005515(InterPro)
Sed09g0359 1603 MobiDBLite consensus disorder prediction 1548 1581 - -
Sed09g0359 1603 PANTHER GYF DOMAIN-CONTAINING PROTEIN 1 1603 - -
Sed09g0359 1603 Pfam GYF domain 560 604 IPR003169 GO:0005515(InterPro)
Sed09g0359 1603 MobiDBLite consensus disorder prediction 92 204 - -
Sed09g0359 1603 Coils Coil 896 916 - -
Sed09g0359 1603 MobiDBLite consensus disorder prediction 1 30 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0359 K18730 - - csv:101204211 2349.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed07g0114 Sed-Chr7:1041527 Sed09g0359 Sed-Chr9:3233500 0.00E+00 dispersed
Sed07g0115 Sed-Chr7:1042587 Sed09g0359 Sed-Chr9:3233500 0.00E+00 dispersed
Sed09g0359 Sed-Chr9:3233500 Sed10g1338 Sed-Chr10:29012413 2.20E-32 dispersed
Sed07g0113 Sed-Chr7:1041527 Sed09g0359 Sed-Chr9:3233500 0.00E+00 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1305 . . . Bda11g00384 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy11g01812 Cme11g02345 . . . Bda11g00384 . . . Bma06g01339 Sed09g0359 . . . . . . Cpe17g00925 . Bhi12g02417 Tan06g1477 Cmetu11g1068 . . . . . . . . . . . Lsi09g01748 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003820 2 2 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 2 44