Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sed09g0360 ATGGCGGTTCCTTTTGCTACCACACCTCTGTCCAAGGTTGGCTTGGTTTCTCCTTCCAATACGCCGATCAGAGCTTCAGTTCTGTGTAGTTCGGTTAAGCTTCGTAGGGTTCAGTTGCCGTCGTCCTCGAGTTCGTTGCGTTTTCCTTCTCTGAGATCTTCCTTCAATTCTTTGGATTCGAGGAATGCTGTTCGTTGCTCGGTTCAACCTAGTGCCGAGGCAGCACCTCTACAAGCAAAAGTAACACACAAGGTATATTTCGATGTGAGCATTGGTGATCCAGTAGGGAAGCTTGCTGGGAGGATTGTGATTGGGTTATTCGGTGATGATGTGCCCCAAACCGCGGAGAACTTCCGTGCTCTTTGCACAGGAGAGAAGGGCTTTGGATACAAAGGTTCTGCATTTCATCGTGTAATCAAGGATTTCATGATACAAGGGGGTGACTTTGACAAGGGAAATGGCACAGGAGGTAAAAGCATATATGGTCGTACATTTAAAGATGAAAACTTCAACTTGACTCATACTGGAGCAGGAGTTGTGAGCATGGCAAATGCAGGTCCAAACACTAATGGAAGTCAATTTTTCATATGCACCGTCAAGACGCCATGGCTGGATCAAAGGCATGTGGTTTTTGGGCAAGTCCTGGAAGGGTTGGACATTGTTAAGCAAATTGAGTCGCAAGAAACAGACCGTGTAGACCGACCGTTGAAGAAGGTCGTCATCAGCGACTGCGGGGAGCTTCCAGTAGCCTAA 753 47.41 MAVPFATTPLSKVGLVSPSNTPIRASVLCSSVKLRRVQLPSSSSSLRFPSLRSSFNSLDSRNAVRCSVQPSAEAAPLQAKVTHKVYFDVSIGDPVGKLAGRIVIGLFGDDVPQTAENFRALCTGEKGFGYKGSAFHRVIKDFMIQGGDFDKGNGTGGKSIYGRTFKDENFNLTHTGAGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQVLEGLDIVKQIESQETDRVDRPLKKVVISDCGELPVA 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 3245618 3254623 + Sed0001951.1 Sed09g0360 725124

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Sed09g0360 250 SUPERFAMILY Cyclophilin-like 79 247 IPR029000 -
Sed09g0360 250 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 130 147 IPR020892 GO:0003755(InterPro)|GO:0006457(InterPro)
Sed09g0360 250 FunFam Peptidyl-prolyl cis-trans isomerase 71 250 - -
Sed09g0360 250 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 96 246 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed09g0360 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 178 193 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed09g0360 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 106 121 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed09g0360 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 193 205 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed09g0360 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 147 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed09g0360 250 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 206 221 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed09g0360 250 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 97 245 IPR002130 GO:0000413(InterPro)|GO:0003755(InterPro)
Sed09g0360 250 Gene3D - 71 250 IPR029000 -
Sed09g0360 250 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 82 247 - -
Sed09g0360 250 CDD cyclophilin_ABH_like 83 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sed09g0360 K03768 - - csv:101218923 370.548
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Sed08g2161 Sed-Chr8:35537969 Sed09g0360 Sed-Chr9:3245618 8.10E-11 dispersed
Sed09g0360 Sed-Chr9:3245618 Sed10g2048 Sed-Chr10:36999815 1.00E-50 dispersed
Sed02g0502 Sed-Chr2:42571865 Sed09g0360 Sed-Chr9:3245618 3.20E-32 transposed
Sed08g1550 Sed-Chr8:30605188 Sed09g0360 Sed-Chr9:3245618 8.10E-21 transposed
Sed11g1520 Sed-Chr11:30831087 Sed09g0360 Sed-Chr9:3245618 6.20E-72 transposed
Sed13g1879 Sed-Chr13:23782727 Sed09g0360 Sed-Chr9:3245618 1.70E-20 transposed
Sed07g0112 Sed-Chr7:1037100 Sed09g0360 Sed-Chr9:3245618 8.70E-101 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1302 . . . . . . . Bma15g00278 . . . . . . . . . . . . . . . . Cla06g00178 Cam06g0033 Cec06g0197 Cco06g0192 Clacu06g0194 Cmu06g0188 Cre06g0960 . . . . Lsi04g00730 . Chy11g01811 Cme11g02344 Blo06g00788 Blo12g00285 . . . . . . Sed09g0360 . . . . . . . . Bhi12g02419 Tan06g1479 Cmetu11g1517 . Hepe03g1142 . . . . . . . . . Lsi09g01747 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009740 2 1 1 2 1 1 1 1 1 1 1 1 0 1 1 0 1 2 1 1 1 1 1 1 1 1 1 2 2 1 33